IRF6 (Taeniopygia guttata)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSTGUG00000001485 T244410_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.990 0.990
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.981 0.981
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.962 0.962
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.933 0.933
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.933 0.933
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.933 0.933
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.933 0.933
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.933 0.933
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.781 0.781
Irf5
M00177_2.00 		Mus musculus
NNNHGADASH
DSTHTCDNNN		 PBM
Badis et al.(2009)
Irf5_3874 		0.724 0.724
IRF5
M03332_2.00 		Homo sapiens
YCGAAACCGAAMCY
RGKTTCGGTTTCGR		 SELEX
Jolma et al.(2013)
IRF5_1 		0.724 0.724
IRF5
M03333_2.00 		Homo sapiens
HACCGAAACYV
BRGTTTCGGTD		 SELEX
Jolma et al.(2013)
IRF5_2 		0.724 0.724
IRF5
M05535_2.00 		Homo sapiens
NCGAAACCGAWACH
DGTWTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_eDBD_HT-SELEX 		0.724 0.724
IRF5
M05537_2.00 		Homo sapiens
NCGAAACCGAAACY
RGTTTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_FL_HT-SELEX 		0.724 0.724
IRF5
M10884_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF5_Q3 		0.724 0.724
IRF5
M05536_2.00 		Homo sapiens
NYGAWACYGAWACH
DGTWTCRGTWTCRN		 SELEX
Yin et al.(2017)
IRF5_eDBD_Methyl-HT-SELEX 		0.724 0.724
IRF5
M05538_2.00 		Homo sapiens
NYGAAACCGAWACY
RGTWTCGGTTTCRN		 SELEX
Yin et al.(2017)
IRF5_FL_Methyl-HT-SELEX 		0.724 0.724
IRF5
M02256_2.00 		Oryctolagus cuniculus
NHCGAAACYN
NRGTTTCGDN		 PBM
Weirauch et al.(2014)
pTH9272 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000001534 IRF 9 114

Links

Other IRF family TFs
Other Taeniopygia guttata TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I
AT3G05860 Arabidopsis thaliana AT3G05860 I
AGL80 Arabidopsis thaliana AT5G48670 D
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I
Bo9g078450 Brassica oleracea Bo9g078450 I
Bo2g104810 Brassica oleracea Bo2g104810 I
Bra018490 Brassica rapa Bra018490 I
Bra029469 Brassica rapa Bra029469 I
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I
Carubv10014232m.g Capsella rubella Carubv10014232m.g I
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I
evm.TU.supercontig_100.22 Carica papaya evm.TU.supercontig_100.22 N
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I
Ca_13275 Cicer arietinum Ca_13275 I
Ca_06495 Cicer arietinum Ca_06495 I
Cla005226 Citrullus lanatus Cla005226 I
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I
Cucsa.050930 Cucumis sativus Cucsa.050930 I
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I
GLYMA18G04760 Glycine max GLYMA18G04760 I
GLYMA11G33460 Glycine max GLYMA11G33460 I
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I
Lus10032108.g Linum usitatissimum Lus10032108.g I
Lus10014883.g Linum usitatissimum Lus10014883.g I
Lus10014578.g Linum usitatissimum Lus10014578.g I
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I
MDP0000925348 Malus domestica MDP0000925348 I
MDP0000846004 Malus domestica MDP0000846004 I
cassava19828.m1 Manihot esculenta cassava19828.m1 I
MTR_3g065100 Medicago truncatula MTR_3g065100 I
mgf026186m Mimulus guttatus mgf026186m I
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I
Pm004396 Prunus mume Pm004396 I
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I
30128.m008984 Ricinus communis 30128.m008984 I
30199.m000879 Ricinus communis 30199.m000879 I
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I
TCM_025670 Theobroma cacao TCM_025670 I
TCM_042799 Theobroma cacao TCM_042799 I
TCM_026845 Theobroma cacao TCM_026845 I
TCM_026842 Theobroma cacao TCM_026842 I
TCM_025676 Theobroma cacao TCM_025676 N
TCM_025671 Theobroma cacao TCM_025671 I
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I
GRMZM5G853066 Zea mays GRMZM5G853066 N