CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CJA00680
(
Caenorhabditis japonica
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
CJA00680
T301927_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.935
0.629
nhr-1
M00686_2.00
Caenorhabditis elegans
ARTGATCA
TGATCAYT
PBM
Narasimhan et al.(2015)
pTH9322
0.848
0.586
nhr-204
M00704_2.00
Caenorhabditis elegans
NDNTGRTMHN
NDKAYCANHN
PBM
Narasimhan et al.(2015)
pTH10028
0.787
0.471
CBG26996_CONSTRUCT
M01300_2.00
PBM CONSTRUCTS
NNNNTGRWMN
NKWYCANNNN
PBM
Lambert et al.(2019)
pTH11460
0.785
0.486
nhr-154
M00698_2.00
Caenorhabditis elegans
NRBRYCAHWD
HWDTGRYVYN
PBM
Narasimhan et al.(2015)
pTH10650
0.769
0.614
CBG23380
M01296_2.00
Caenorhabditis briggsae
NDBDHHANWN
NWNTDDHVHN
PBM
Lambert et al.(2019)
pTH11449
0.764
0.600
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA00680
Nuclear receptor
73
144
TICAVCGDKATGYHYEVPSCNGCKTFFRRTVLSQRKYDCMREGKCFNVLPKEKRCSCRSCRFQKCVEVGMNP
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis japonica
TFs
240 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy