Carubv10011394m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10011394m.g T007864_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF017
M06568_2.00 		Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN		 Dap-seq
OMalley et al.(2016)
At1g19210_col_a 		0.829 1.000
ERF017
M06569_2.00 		Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN		 Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a 		0.829 1.000
ERF018
M00842_2.00 		Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD		 PBM
Franco-Zorrilla et al.(2014)
ORA47 		0.803 0.920
ERF018
M01610_2.00 		Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN		 PBM
Weirauch et al.(2014)
pTH7215 		0.803 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10011394m AP2 11 62

Links

Other AP2 family TFs
Other Capsella rubella TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001041 Ricinus communis 29738.m001041 I
30167.m000856 Ricinus communis 30167.m000856 I
AC233950.1_FG002 Zea mays AC233950.1_FG002 I
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I
TCP1 Arabidopsis thaliana AT1G67260 D
BRC2 Arabidopsis thaliana AT1G68800 I
BGIOSGA013417 Oryza indica BGIOSGA013417 I
BGIOSGA030744 Oryza indica BGIOSGA030744 I
Bo2g055640 Brassica oleracea Bo2g055640 I
Bo2g061250 Brassica oleracea Bo2g061250 I
Bo6g099040 Brassica oleracea Bo6g099040 I
Bo6g103670 Brassica oleracea Bo6g103670 I
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I
Bra004097 Brassica rapa Bra004097 I
Bra004212 Brassica rapa Bra004212 I
Bra034010 Brassica rapa Bra034010 I
Bra038350 Brassica rapa Bra038350 I
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I
Carubv10020487m.g Capsella rubella Carubv10020487m.g I
Carubv10020555m.g Capsella rubella Carubv10020555m.g I
cassava10552.m1 Manihot esculenta cassava10552.m1 I
cassava16230.m1 Manihot esculenta cassava16230.m1 I
cassava32886.m1 Manihot esculenta cassava32886.m1 I
cassava9378.m1 Manihot esculenta cassava9378.m1 I
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I
Cla002355 Citrullus lanatus Cla002355 I
Cla007227 Citrullus lanatus Cla007227 I
Cla016709 Citrullus lanatus Cla016709 I
Cucsa.031600 Cucumis sativus Cucsa.031600 I
Cucsa.238090 Cucumis sativus Cucsa.238090 I
Cucsa.280880 Cucumis sativus Cucsa.280880 I
Cucsa.283930 Cucumis sativus Cucsa.283930 I
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I
F775_01923 Aegilops tauschii F775_01923 I
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I
GLYMA05G07943 Glycine max GLYMA05G07943 I
GLYMA08G28691 Glycine max GLYMA08G28691 I
GLYMA10G39141 Glycine max GLYMA10G39141 I
GLYMA13G07475 Glycine max GLYMA13G07475 I
GLYMA17G13065 Glycine max GLYMA17G13065 I
GLYMA18G51581 Glycine max GLYMA18G51581 I
GLYMA19G05921 Glycine max GLYMA19G05921 I
GLYMA20G28670 Glycine max GLYMA20G28670 I
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I
GRMZM2G031905 Zea mays GRMZM2G031905 I
GRMZM2G060319 Zea mays GRMZM2G060319 I
GRMZM2G062711 Zea mays GRMZM2G062711 I
GRMZM2G064628 Zea mays GRMZM2G064628 I
GRMZM2G110242 Zea mays GRMZM2G110242 I
GRMZM2G166687 Zea mays GRMZM2G166687 I
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I
LPERR03G25950 Leersia perrieri LPERR03G25950 I
LPERR08G12880 Leersia perrieri LPERR08G12880 I
LPERR09G06870 Leersia perrieri LPERR09G06870 I
Lus10003078.g Linum usitatissimum Lus10003078.g I
Lus10021713.g Linum usitatissimum Lus10021713.g I
Lus10034072.g Linum usitatissimum Lus10034072.g I
MDP0000173048 Malus domestica MDP0000173048 I
MDP0000272980 Malus domestica MDP0000272980 I
mgf019480m Mimulus guttatus mgf019480m I
mgf022233m Mimulus guttatus mgf022233m I
mgf026636m Mimulus guttatus mgf026636m I
MLOC_4614 Hordeum vulgare MLOC_4614 I
MLOC_58142 Hordeum vulgare MLOC_58142 I
MLOC_70116 Hordeum vulgare MLOC_70116 I
MTR_1g103380 Medicago truncatula MTR_1g103380 I
MTR_4g111935 Medicago truncatula MTR_4g111935 I
MTR_6g017055 Medicago truncatula MTR_6g017055 I
MTR_7g018500 Medicago truncatula MTR_7g018500 I
OBART03G31290 Oryza barthii OBART03G31290 I
OBART09G10040 Oryza barthii OBART09G10040 I
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I
OMERI03G27910 Oryza meridionalis OMERI03G27910 I
OMERI09G07770 Oryza meridionalis OMERI09G07770 I
ONIVA03G32600 Oryza nivara ONIVA03G32600 I
ONIVA08G16720 Oryza nivara ONIVA08G16720 I
ONIVA09G09540 Oryza nivara ONIVA09G09540 I
OPUNC03G28490 Oryza punctata OPUNC03G28490 I
OPUNC08G13710 Oryza punctata OPUNC08G13710 I
OPUNC09G08520 Oryza punctata OPUNC09G08520 I
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I
ORGLA03G0289500 Oryza glaberrima ORGLA03G0289500 I
ORGLA08G0137200 Oryza glaberrima ORGLA08G0137200 I
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I
TB1 Oryza sativa OS03G0706500 D
OS09G0410500 Oryza sativa OS09G0410500 I
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I
Pavir.Ia00838 Panicum virgatum Pavir.Ia00838 I
Pavir.Ib04362 Panicum virgatum Pavir.Ib04362 I
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I
PK12240.1 Cannabis sativa PK12240.1 D
PK19717.1 Cannabis sativa PK19717.1 D
Pm015499 Prunus mume Pm015499 I
Pm029002 Prunus mume Pm029002 I
Pm030202 Prunus mume Pm030202 I
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I
Sb01g010690 Sorghum bicolor Sb01g010690 I
Sb02g024450 Sorghum bicolor Sb02g024450 I
Sb07g021140 Sorghum bicolor Sb07g021140 I
Si015230m.g Setaria italica Si015230m.g I
Si033183m.g Setaria italica Si033183m.g I
Si038692m.g Setaria italica Si038692m.g I
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N
TCM_011874 Theobroma cacao TCM_011874 I
TCM_012252 Theobroma cacao TCM_012252 I
TCM_019518 Theobroma cacao TCM_019518 I
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I
TRIUR3_20728 Triticum urartu TRIUR3_20728 I
TRIUR3_31795 Triticum urartu TRIUR3_31795 I
BRC2 Vitis vinifera VIT_01s0011g02920 I
TCP1 Vitis vinifera VIT_14s0083g00150 I