PPA29597 (Pristionchus pacificus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 PPA29597 T305943_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-49
M02413_2.00 		Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN		 PBM
Weirauch et al.(2014)
pTH5891 		0.841 0.514
nhr-154
M00698_2.00 		Caenorhabditis elegans
NRBRYCAHWD
HWDTGRYVYN		 PBM
Narasimhan et al.(2015)
pTH10650 		0.826 0.543
CBG23380
M01296_2.00 		Caenorhabditis briggsae
NDBDHHANWN
NWNTDDHVHN		 PBM
Lambert et al.(2019)
pTH11449 		0.824 0.543
CBG26996_CONSTRUCT
M01300_2.00 		PBM CONSTRUCTS
NNNNTGRWMN
NKWYCANNNN		 PBM
Lambert et al.(2019)
pTH11460 		0.805 0.514
nhr-204
M00704_2.00 		Caenorhabditis elegans
NDNTGRTMHN
NDKAYCANHN		 PBM
Narasimhan et al.(2015)
pTH10028 		0.802 0.529
nhr-1
M00686_2.00 		Caenorhabditis elegans
ARTGATCA
TGATCAYT		 PBM
Narasimhan et al.(2015)
pTH9322 		0.768 0.457
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PPA29597 Nuclear receptor 65 139

Links

Other Nuclear receptor family TFs
Other Pristionchus pacificus TFs

201 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000711701 Angiostrongylus cantonensis ACAC_0000711701 I 0.851
ACAC_0001297301 Angiostrongylus cantonensis ACAC_0001297301 I 0.811
ACOC_0000700901 Angiostrongylus costaricensis ACOC_0000700901 I 0.763
ALUE_0002179401 Ascaris lumbricoides ALUE_0002179401 I 0.762
ANCCAN_09880 Ancylostoma caninum ANCCAN_09880 I 0.910
ANCCAN_14103 Ancylostoma caninum ANCCAN_14103 I 0.765
ANCCAN_17081 Ancylostoma caninum ANCCAN_17081 I 0.765
ANCCEY_01254 Ancylostoma ceylanicum ANCCEY_01254 I 0.951
ANCCEY_01961 Ancylostoma ceylanicum ANCCEY_01961 I 0.768
ASIM_0001569801 Anisakis simplex ASIM_0001569801 I 0.943
ASU_02757 Ascaris suum ASU_02757 N 0.887
ASU_03657 Ascaris suum ASU_03657 I 0.953
ASU_03870 Ascaris suum ASU_03870 I 0.841
ASU_12501 Ascaris suum ASU_12501 I 0.762
ASU_13587 Ascaris suum ASU_13587 I 0.840
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0 I 0.792
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0 I 0.770
Bm4980 Brugia malayi Bm4980 I 0.843
Bm5319 Brugia malayi Bm5319 I 0.760
BTMF_0000217201 Brugia timori BTMF_0000217201 I 0.843
BTMF_0000941401 Brugia timori BTMF_0000941401 I 0.919
BTMF_0001388101 Brugia timori BTMF_0001388101 I 0.760
BXY_0360200 Bursaphelenchus xylophilus BXY_0360200 I 0.768
BXY_0599800 Bursaphelenchus xylophilus BXY_0599800 I 0.810
BXY_0631600 Bursaphelenchus xylophilus BXY_0631600 I 0.803
BXY_1057600 Bursaphelenchus xylophilus BXY_1057600 I 0.833
BXY_1375200 Bursaphelenchus xylophilus BXY_1375200 I 0.812
CBG01866 Caenorhabditis briggsae CBG01866 I 0.768
CBG03844 Caenorhabditis briggsae CBG03844 I 0.841
CBG10855 Caenorhabditis briggsae CBG10855 I 0.948
CBG10857 Caenorhabditis briggsae CBG10857 I 0.959
CBG14996 Caenorhabditis briggsae CBG14996 I 0.760
CBG23380 Caenorhabditis briggsae CBG23380 D 0.824
CBG23381 Caenorhabditis briggsae CBG23381 I 0.793
CBG26996 Caenorhabditis briggsae CBG26996 I 0.805
CBG26996_CONSTRUCT PBM CONSTRUCTS CBG26996_CONSTRUCT D 0.805
CBN18198 Caenorhabditis brenneri CBN18198 I 0.841
CBN19235 Caenorhabditis brenneri CBN19235 I 0.768
CBN20749 Caenorhabditis brenneri CBN20749 I 0.841
CBN23409 Caenorhabditis brenneri CBN23409 I 0.809
CBN24827 Caenorhabditis brenneri CBN24827 I 0.948
CBN28056 Caenorhabditis brenneri CBN28056 I 0.809
CBN28497 Caenorhabditis brenneri CBN28497 I 0.824
CBN28791 Caenorhabditis brenneri CBN28791 I 0.778
CBN29725 Caenorhabditis brenneri CBN29725 I 0.878
CJA00680 Caenorhabditis japonica CJA00680 I 0.963
CJA08896 Caenorhabditis japonica CJA08896 I 0.948
CJA13458 Caenorhabditis japonica CJA13458 I 0.768
CJA14829 Caenorhabditis japonica CJA14829 I 0.792
CJA41479 Caenorhabditis japonica CJA41479 I 0.752
CRE00149 Caenorhabditis remanei CRE00149 I 0.949
CRE00606 Caenorhabditis remanei CRE00606 I 0.959
CRE03310 Caenorhabditis remanei CRE03310 I 0.768
CRE08259 Caenorhabditis remanei CRE08259 I 0.841
CRE09416 Caenorhabditis remanei CRE09416 I 0.763
CRE27050 Caenorhabditis remanei CRE27050 I 0.824
CRE27052 Caenorhabditis remanei CRE27052 I 0.772
CRE27053 Caenorhabditis remanei CRE27053 I 0.878
DICVIV_00957 Dictyocaulus viviparus DICVIV_00957 I 0.851
DICVIV_09815 Dictyocaulus viviparus DICVIV_09815 I 0.763
DME_0000591901 Dracunculus medinensis DME_0000591901 I 0.845
DME_0000693601 Dracunculus medinensis DME_0000693601 I 0.760
DME_0000747901 Dracunculus medinensis DME_0000747901 I 0.853
EEL_0000204901 Elaeophora elaphi EEL_0000204901 I 0.807
EEL_0000989101 Elaeophora elaphi EEL_0000989101 I 0.917
EVEC_0000027301 Enterobius vermicularis EVEC_0000027301 I 0.773
EVEC_0001313601 Enterobius vermicularis EVEC_0001313601 I 0.839
GPLIN_000284100 Globodera pallida GPLIN_000284100 I 0.781
GPLIN_000337500 Globodera pallida GPLIN_000337500 I 0.807
GPLIN_001175700 Globodera pallida GPLIN_001175700 I 0.841
Hba_12763 Heterorhabditis bacteriophora Hba_12763 I 0.860
Hba_12764 Heterorhabditis bacteriophora Hba_12764 N 0.774
HCOI00601000 Haemonchus contortus HCOI00601000 I 0.771
HCOI00618700 Haemonchus contortus HCOI00618700 I 0.851
HCOI01292200 Haemonchus contortus HCOI01292200 I 0.951
HCOI01525900 Haemonchus contortus HCOI01525900 I 0.918
HCOI01554200 Haemonchus contortus HCOI01554200 I 0.768
HPBE_0000704501 Heligmosomoides bakeri HPBE_0000704501 I 0.920
HPBE_0000837301 Heligmosomoides bakeri HPBE_0000837301 I 0.768
HPBE_0001246601 Heligmosomoides bakeri HPBE_0001246601 I 0.918
HPLM_0000564201 Haemonchus placei HPLM_0000564201 I 0.771
HPLM_0000769401 Haemonchus placei HPLM_0000769401 I 0.950
L596_g11035 Steinernema carpocapsae L596_g11035 I 0.825
L596_g12276 Steinernema carpocapsae L596_g12276 I 0.754
L596_g12321 Steinernema carpocapsae L596_g12321 I 0.764
L596_g23123 Steinernema carpocapsae L596_g23123 I 0.831
L596_g23777 Steinernema carpocapsae L596_g23777 I 0.763
L596_g23863 Steinernema carpocapsae L596_g23863 I 0.886
L596_g27472 Steinernema carpocapsae L596_g27472 I 0.941
L889_g11570 Steinernema feltiae L889_g11570 I 0.831
L889_g1557 Steinernema feltiae L889_g1557 I 0.955
L889_g17247 Steinernema feltiae L889_g17247 I 0.825
L889_g1891 Steinernema feltiae L889_g1891 I 0.949
L889_g29879 Steinernema feltiae L889_g29879 I 0.764
L889_g7780 Steinernema feltiae L889_g7780 I 0.754
L892_g17612 Steinernema scapterisci L892_g17612 I 0.955
L892_g4134 Steinernema scapterisci L892_g4134 I 0.829
L892_g4169 Steinernema scapterisci L892_g4169 I 0.953
L892_g8671 Steinernema scapterisci L892_g8671 I 0.754
L893_g13285 Steinernema glaseri L893_g13285 I 0.826
L893_g21283 Steinernema glaseri L893_g21283 I 0.831
L893_g25227 Steinernema glaseri L893_g25227 I 0.763
L893_g28857 Steinernema glaseri L893_g28857 I 0.957
L893_g3010 Steinernema glaseri L893_g3010 I 0.764
L893_g3565 Steinernema glaseri L893_g3565 I 0.957
L898_g22454 Steinernema monticolum L898_g22454 I 0.748
L898_g23058 Steinernema monticolum L898_g23058 I 0.831
L898_g26357 Steinernema monticolum L898_g26357 I 0.825
L898_g2764 Steinernema monticolum L898_g2764 I 0.764
L898_g9866 Steinernema monticolum L898_g9866 I 0.955
LOAG_00300 Loa loa LOAG_00300 I 0.760
LOAG_08615 Loa loa LOAG_08615 I 0.840
LOAG_08636 Loa loa LOAG_08636 I 0.807
LOAG_16377 Loa loa LOAG_16377 I 0.919
MhA1_Contig2491.frz3.gene4 Meloidogyne hapla MhA1_Contig2491.frz3.gene4 I 0.770
MhA1_Contig817.frz3.gene1 Meloidogyne hapla MhA1_Contig817.frz3.gene1 I 0.781
Minc13747 Meloidogyne incognita Minc13747 I 0.781
Minc17538 Meloidogyne incognita Minc17538 I 0.781
nAv.1.0.1.g09196 Acanthocheilonema viteae nAv.1.0.1.g09196 I 0.807
nDi.2.2.2.g02318 Dirofilaria immitis nDi.2.2.2.g02318 I 0.760
nDi.2.2.2.g09348 Dirofilaria immitis nDi.2.2.2.g09348 I 0.807
NECAME_00872 Necator americanus NECAME_00872 I 0.762
NECAME_01944 Necator americanus NECAME_01944 I 0.923
NECAME_08394 Necator americanus NECAME_08394 I 0.953
nLs.2.1.2.g04051 Litomosoides sigmodontis nLs.2.1.2.g04051 I 0.809
nOo.2.0.1.g01530 Onchocerca ochengi nOo.2.0.1.g01530 I 0.760
nOo.2.0.1.g02345 Onchocerca ochengi nOo.2.0.1.g02345 I 0.832
nOo.2.0.1.g03859 Onchocerca ochengi nOo.2.0.1.g03859 I 0.815
OFLC_0001450101 Onchocerca flexuosa OFLC_0001450101 I 0.760
PEQ_0000391501 Parascaris equorum PEQ_0000391501 I 0.841
PEQ_0000722401 Parascaris equorum PEQ_0000722401 I 0.953
Ppa-nhr-120 Pristionchus pacificus PPA00183 I 0.897
PPA06637 Pristionchus pacificus PPA06637 I 0.959
PPA10975 Pristionchus pacificus PPA10975 N 0.851
PPA17263 Pristionchus pacificus PPA17263 I 0.772
PPA21777 Pristionchus pacificus PPA21777 I 0.946
PPA22443 Pristionchus pacificus PPA22443 I 0.782
PPA24468 Pristionchus pacificus PPA24468 I 0.842
PPA24481 Pristionchus pacificus PPA24481 I 0.931
PPA27013 Pristionchus pacificus PPA27013 N 0.782
Ppa-nhr-3 Pristionchus pacificus PPA28597 I 0.799
PTRK_0000480700 Parastrongyloides trichosuri PTRK_0000480700 I 0.828
PTRK_0000720500 Parastrongyloides trichosuri PTRK_0000720500 I 0.834
PTRK_0000994100 Parastrongyloides trichosuri PTRK_0000994100 I 0.848
PTRK_0001020800 Parastrongyloides trichosuri PTRK_0001020800 I 0.826
PTRK_0001312000 Parastrongyloides trichosuri PTRK_0001312000 I 0.774
RSKR_0000342500 Rhabditophanes kr3021 RSKR_0000342500 I 0.809
RSKR_0001171300 Rhabditophanes kr3021 RSKR_0001171300 I 0.753
scaffold107-EXSNAP2012.33 Pristionchus exspectatus scaffold107-EXSNAP2012.33 I 0.782
scaffold204-EXSNAP2012.8 Pristionchus exspectatus scaffold204-EXSNAP2012.8 N 0.778
scaffold251-EXSNAP2012.44 Pristionchus exspectatus scaffold251-EXSNAP2012.44 I 0.942
scaffold265-EXSNAP2012.2 Pristionchus exspectatus scaffold265-EXSNAP2012.2 I 0.842
scaffold384-EXSNAP2012.4 Pristionchus exspectatus scaffold384-EXSNAP2012.4 I 0.897
scaffold395-EXSNAP2012.23 Pristionchus exspectatus scaffold395-EXSNAP2012.23 I 0.799
scaffold426-EXSNAP2012.35 Pristionchus exspectatus scaffold426-EXSNAP2012.35 I 0.988
scaffold43-EXSNAP2012.41 Pristionchus exspectatus scaffold43-EXSNAP2012.41 I 0.949
scaffold488-EXSNAP2012.17 Pristionchus exspectatus scaffold488-EXSNAP2012.17 I 0.761
scaffold552-EXSNAP2012.17 Pristionchus exspectatus scaffold552-EXSNAP2012.17 I 0.931
scaffold552-EXSNAP2012.18 Pristionchus exspectatus scaffold552-EXSNAP2012.18 I 0.973
scaffold572-EXSNAP2012.7 Pristionchus exspectatus scaffold572-EXSNAP2012.7 I 0.897
scaffold598-EXSNAP2012.5 Pristionchus exspectatus scaffold598-EXSNAP2012.5 I 0.948
scaffold605-EXSNAP2012.9 Pristionchus exspectatus scaffold605-EXSNAP2012.9 I 0.826
scaffold731-EXSNAP2012.1 Pristionchus exspectatus scaffold731-EXSNAP2012.1 I 0.772
scaffold826-EXSNAP2012.10 Pristionchus exspectatus scaffold826-EXSNAP2012.10 I 0.942
scaffold92-EXSNAP2012.31 Pristionchus exspectatus scaffold92-EXSNAP2012.31 N 0.876
SMUV_0000708401 Syphacia muris SMUV_0000708401 I 0.791
SMUV_0001072301 Syphacia muris SMUV_0001072301 I 0.868
SPAL_0000490500 Strongyloides papillosus SPAL_0000490500 I 0.768
SPAL_0000841700 Strongyloides papillosus SPAL_0000841700 I 0.831
SPAL_0001099500 Strongyloides papillosus SPAL_0001099500 I 0.826
SPAL_0001637600 Strongyloides papillosus SPAL_0001637600 I 0.851
SPAL_0001712900 Strongyloides papillosus SPAL_0001712900 I 0.828
SSTP_0000055100 Strongyloides stercoralis SSTP_0000055100 I 0.851
SSTP_0000145700 Strongyloides stercoralis SSTP_0000145700 I 0.834
SSTP_0000546600 Strongyloides stercoralis SSTP_0000546600 I 0.796
SSTP_0000769100 Strongyloides stercoralis SSTP_0000769100 I 0.826
SSTP_0001253400 Strongyloides stercoralis SSTP_0001253400 I 0.828
SVE_0146100 Strongyloides venezuelensis SVE_0146100 I 0.828
SVE_0429000 Strongyloides venezuelensis SVE_0429000 I 0.851
SVE_0858700 Strongyloides venezuelensis SVE_0858700 I 0.826
SVE_1799100 Strongyloides venezuelensis SVE_1799100 I 0.831
SVE_1951500 Strongyloides venezuelensis SVE_1951500 I 0.768
TCLT_0000256201 Thelazia callipaeda TCLT_0000256201 I 0.849
TCLT_0000399401 Thelazia callipaeda TCLT_0000399401 I 0.760
TCLT_0000461101 Thelazia callipaeda TCLT_0000461101 I 0.843
TCLT_0000612301 Thelazia callipaeda TCLT_0000612301 I 0.853
TCNE_0001076801 Toxocara canis TCNE_0001076801 N 0.832
nhr-1 Caenorhabditis elegans WBGene00003600 D 0.768
nhr-10 Caenorhabditis elegans WBGene00003609 I 0.753
nhr-49 Caenorhabditis elegans WBGene00003639 D 0.841
nhr-120 Caenorhabditis elegans WBGene00003710 I 0.948
nhr-136 Caenorhabditis elegans WBGene00003726 I 0.914
nhr-153 Caenorhabditis elegans WBGene00007546 I 0.785
nhr-154 Caenorhabditis elegans WBGene00007547 D 0.826
nhr-173 Caenorhabditis elegans WBGene00016975 I 0.959
nhr-141 Caenorhabditis elegans WBGene00017787 I 0.776
nhr-204 Caenorhabditis elegans WBGene00019816 D 0.802
WBGene00236987 Onchocerca volvulus WBGene00236987 I 0.832
WBGene00240403 Onchocerca volvulus WBGene00240403 I 0.908
WBGene00240560 Onchocerca volvulus WBGene00240560 I 0.815
WBGene00241993 Onchocerca volvulus WBGene00241993 I 0.748