GRMZM2G529859 (Zea mays)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GRMZM2G529859 T330341_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.689 0.727
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.689 0.727
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.678 0.955
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.644 0.886
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.644 0.886
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.567 0.727
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G529859_P02 Sox 132 175

Links

Other Sox family TFs
Other Zea mays TFs

521 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000711701 Angiostrongylus cantonensis ACAC_0000711701 I
ACAC_0001297301 Angiostrongylus cantonensis ACAC_0001297301 I
ACOC_0000048701 Angiostrongylus costaricensis ACOC_0000048701 I
ACOC_0000700901 Angiostrongylus costaricensis ACOC_0000700901 I
ACOC_0000744201 Angiostrongylus costaricensis ACOC_0000744201 I
ACOC_0000869501 Angiostrongylus costaricensis ACOC_0000869501 I
ALUE_0002179401 Ascaris lumbricoides ALUE_0002179401 I
ANCCAN_14103 Ancylostoma caninum ANCCAN_14103 I
ANCCAN_17081 Ancylostoma caninum ANCCAN_17081 I
ANCCAN_19046 Ancylostoma caninum ANCCAN_19046 I
ANCCAN_24419 Ancylostoma caninum ANCCAN_24419 I
ANCCEY_01254 Ancylostoma ceylanicum ANCCEY_01254 I
ANCCEY_01961 Ancylostoma ceylanicum ANCCEY_01961 I
ANCDUO_17367 Ancylostoma duodenale ANCDUO_17367 I
ASIM_0001308601 Anisakis simplex ASIM_0001308601 I
ASIM_0001569801 Anisakis simplex ASIM_0001569801 I
ASU_02770 Ascaris suum ASU_02770 I
ASU_03657 Ascaris suum ASU_03657 I
ASU_03870 Ascaris suum ASU_03870 I
ASU_10584 Ascaris suum ASU_10584 I
ASU_12501 Ascaris suum ASU_12501 I
ASU_13587 Ascaris suum ASU_13587 I
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0 I
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0 I
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0 I
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0 I
Bm4980 Brugia malayi Bm4980 I
Bm5319 Brugia malayi Bm5319 I
Bm5520 Brugia malayi Bm5520 I
BTMF_0000217201 Brugia timori BTMF_0000217201 I
BTMF_0000941401 Brugia timori BTMF_0000941401 I
BTMF_0001127801 Brugia timori BTMF_0001127801 I
BTMF_0001388101 Brugia timori BTMF_0001388101 I
BXY_0360200 Bursaphelenchus xylophilus BXY_0360200 I
BXY_0599800 Bursaphelenchus xylophilus BXY_0599800 I
BXY_0631600 Bursaphelenchus xylophilus BXY_0631600 I
BXY_0988800 Bursaphelenchus xylophilus BXY_0988800 I
BXY_1057600 Bursaphelenchus xylophilus BXY_1057600 I
BXY_1375200 Bursaphelenchus xylophilus BXY_1375200 I
CBG00093 Caenorhabditis briggsae CBG00093 I
CBG01866 Caenorhabditis briggsae CBG01866 I
CBG02077 Caenorhabditis briggsae CBG02077 I
CBG03844 Caenorhabditis briggsae CBG03844 I
CBG09380 Caenorhabditis briggsae CBG09380 I
CBG10855 Caenorhabditis briggsae CBG10855 I
CBG10857 Caenorhabditis briggsae CBG10857 I
CBG14485 Caenorhabditis briggsae CBG14485 I
CBG16594 Caenorhabditis briggsae CBG16594 I
CBG23318 Caenorhabditis briggsae CBG23318 I
CBG23319 Caenorhabditis briggsae CBG23319 I
CBN07240 Caenorhabditis brenneri CBN07240 I
CBN11572 Caenorhabditis brenneri CBN11572 I
CBN15481 Caenorhabditis brenneri CBN15481 I
CBN18198 Caenorhabditis brenneri CBN18198 I
CBN19235 Caenorhabditis brenneri CBN19235 I
CBN20518 Caenorhabditis brenneri CBN20518 I
CBN20749 Caenorhabditis brenneri CBN20749 I
CBN21115 Caenorhabditis brenneri CBN21115 I
CBN24827 Caenorhabditis brenneri CBN24827 I
CBN28528 Caenorhabditis brenneri CBN28528 I
CBN30215 Caenorhabditis brenneri CBN30215 I
CJA00680 Caenorhabditis japonica CJA00680 I
CJA01292 Caenorhabditis japonica CJA01292 I
CJA06153 Caenorhabditis japonica CJA06153 I
CJA08896 Caenorhabditis japonica CJA08896 I
CJA13458 Caenorhabditis japonica CJA13458 I
CJA16040 Caenorhabditis japonica CJA16040 I
CJA37776 Caenorhabditis japonica CJA37776 I
CRE00149 Caenorhabditis remanei CRE00149 I
CRE00606 Caenorhabditis remanei CRE00606 I
CRE00809 Caenorhabditis remanei CRE00809 I
CRE03310 Caenorhabditis remanei CRE03310 I
CRE07549 Caenorhabditis remanei CRE07549 I
CRE08259 Caenorhabditis remanei CRE08259 I
CRE24074 Caenorhabditis remanei CRE24074 I
CRE25378 Caenorhabditis remanei CRE25378 I
CRE26981 Caenorhabditis remanei CRE26981 I
CRE26982 Caenorhabditis remanei CRE26982 I
CRE30787 Caenorhabditis remanei CRE30787 I
D917_06779 Trichinella nativa D917_06779 I
DICVIV_00957 Dictyocaulus viviparus DICVIV_00957 I
DICVIV_03784 Dictyocaulus viviparus DICVIV_03784 I
DICVIV_09815 Dictyocaulus viviparus DICVIV_09815 I
DICVIV_12420 Dictyocaulus viviparus DICVIV_12420 I
DICVIV_13545 Dictyocaulus viviparus DICVIV_13545 I
DME_0000591901 Dracunculus medinensis DME_0000591901 I
DME_0000693601 Dracunculus medinensis DME_0000693601 I
DME_0000747901 Dracunculus medinensis DME_0000747901 I
DME_0001010101 Dracunculus medinensis DME_0001010101 I
EEL_0000204901 Elaeophora elaphi EEL_0000204901 I
EEL_0000987201 Elaeophora elaphi EEL_0000987201 I
EEL_0000989101 Elaeophora elaphi EEL_0000989101 I
EFV54558 Trichinella spiralis EFV54558 I
EVEC_0000027301 Enterobius vermicularis EVEC_0000027301 I
EVEC_0000477801 Enterobius vermicularis EVEC_0000477801 I
EVEC_0001313601 Enterobius vermicularis EVEC_0001313601 I
GPLIN_000284100 Globodera pallida GPLIN_000284100 I
GPLIN_000337500 Globodera pallida GPLIN_000337500 I
GPLIN_001175700 Globodera pallida GPLIN_001175700 I
HCOI00052900 Haemonchus contortus HCOI00052900 I
HCOI00592600 Haemonchus contortus HCOI00592600 I
HCOI00601000 Haemonchus contortus HCOI00601000 I
HCOI00618700 Haemonchus contortus HCOI00618700 I
HCOI00673400 Haemonchus contortus HCOI00673400 I
HCOI01292200 Haemonchus contortus HCOI01292200 I
HCOI01687000 Haemonchus contortus HCOI01687000 I
HPBE_0000704501 Heligmosomoides bakeri HPBE_0000704501 I
HPBE_0000837301 Heligmosomoides bakeri HPBE_0000837301 I
HPBE_0001154501 Heligmosomoides bakeri HPBE_0001154501 I
HPLM_0000564201 Haemonchus placei HPLM_0000564201 I
HPLM_0000769401 Haemonchus placei HPLM_0000769401 I
L596_g11035 Steinernema carpocapsae L596_g11035 I
L596_g12276 Steinernema carpocapsae L596_g12276 I
L596_g12321 Steinernema carpocapsae L596_g12321 I
L596_g14199 Steinernema carpocapsae L596_g14199 I
L596_g19151 Steinernema carpocapsae L596_g19151 I
L596_g23123 Steinernema carpocapsae L596_g23123 I
L596_g23777 Steinernema carpocapsae L596_g23777 I
L596_g23863 Steinernema carpocapsae L596_g23863 I
L596_g27472 Steinernema carpocapsae L596_g27472 I
L596_g702 Steinernema carpocapsae L596_g702 I
L889_g11570 Steinernema feltiae L889_g11570 I
L889_g1557 Steinernema feltiae L889_g1557 I
L889_g17247 Steinernema feltiae L889_g17247 I
L889_g1891 Steinernema feltiae L889_g1891 I
L889_g22901 Steinernema feltiae L889_g22901 I
L889_g29879 Steinernema feltiae L889_g29879 I
L889_g7780 Steinernema feltiae L889_g7780 I
L889_g8914 Steinernema feltiae L889_g8914 I
L892_g17612 Steinernema scapterisci L892_g17612 I
L892_g2422 Steinernema scapterisci L892_g2422 I
L892_g4134 Steinernema scapterisci L892_g4134 I
L892_g4169 Steinernema scapterisci L892_g4169 I
L892_g5067 Steinernema scapterisci L892_g5067 I
L892_g5079 Steinernema scapterisci L892_g5079 I
L892_g8671 Steinernema scapterisci L892_g8671 I
L893_g13285 Steinernema glaseri L893_g13285 I
L893_g15045 Steinernema glaseri L893_g15045 I
L893_g15276 Steinernema glaseri L893_g15276 I
L893_g21283 Steinernema glaseri L893_g21283 I
L893_g22683 Steinernema glaseri L893_g22683 I
L893_g25227 Steinernema glaseri L893_g25227 I
L893_g28857 Steinernema glaseri L893_g28857 I
L893_g3010 Steinernema glaseri L893_g3010 I
L893_g3565 Steinernema glaseri L893_g3565 I
L898_g22454 Steinernema monticolum L898_g22454 I
L898_g23058 Steinernema monticolum L898_g23058 I
L898_g26357 Steinernema monticolum L898_g26357 I
L898_g2764 Steinernema monticolum L898_g2764 I
L898_g30390 Steinernema monticolum L898_g30390 I
L898_g8573 Steinernema monticolum L898_g8573 I
L898_g9866 Steinernema monticolum L898_g9866 I
LOAG_00300 Loa loa LOAG_00300 I
LOAG_03407 Loa loa LOAG_03407 I
LOAG_08615 Loa loa LOAG_08615 I
LOAG_08636 Loa loa LOAG_08636 I
LOAG_16377 Loa loa LOAG_16377 I
MhA1_Contig2491.frz3.gene4 Meloidogyne hapla MhA1_Contig2491.frz3.gene4 I
MhA1_Contig320.frz3.gene45 Meloidogyne hapla MhA1_Contig320.frz3.gene45 I
MhA1_Contig817.frz3.gene1 Meloidogyne hapla MhA1_Contig817.frz3.gene1 I
Minc13747 Meloidogyne incognita Minc13747 I
Minc17538 Meloidogyne incognita Minc17538 I
nAv.1.0.1.g02923 Acanthocheilonema viteae nAv.1.0.1.g02923 I
nAv.1.0.1.g09196 Acanthocheilonema viteae nAv.1.0.1.g09196 I
NBR_0001576001 Nippostrongylus brasiliensis NBR_0001576001 I
NBR_0001903201 Nippostrongylus brasiliensis NBR_0001903201 I
nDi.2.2.2.g02318 Dirofilaria immitis nDi.2.2.2.g02318 I
nDi.2.2.2.g09348 Dirofilaria immitis nDi.2.2.2.g09348 I
NECAME_00872 Necator americanus NECAME_00872 I
NECAME_01070 Necator americanus NECAME_01070 I
NECAME_06702 Necator americanus NECAME_06702 I
NECAME_08394 Necator americanus NECAME_08394 I
nhr-1 Caenorhabditis elegans WBGene00003600 D
nhr-10 Caenorhabditis elegans WBGene00003609 I
nhr-101 Caenorhabditis elegans WBGene00003691 I
nhr-120 Caenorhabditis elegans WBGene00003710 I
nhr-17 Caenorhabditis elegans WBGene00003616 I
nhr-173 Caenorhabditis elegans WBGene00016975 I
nhr-35 Caenorhabditis elegans WBGene00003628 I
nhr-40 Caenorhabditis elegans WBGene00003630 I
nhr-47 Caenorhabditis elegans WBGene00003637 I
nhr-49 Caenorhabditis elegans WBGene00003639 D
nhr-68 Caenorhabditis elegans WBGene00003658 I
nLs.2.1.2.g04051 Litomosoides sigmodontis nLs.2.1.2.g04051 I
nOo.2.0.1.g01530 Onchocerca ochengi nOo.2.0.1.g01530 I
nOo.2.0.1.g02345 Onchocerca ochengi nOo.2.0.1.g02345 I
nOo.2.0.1.g03355 Onchocerca ochengi nOo.2.0.1.g03355 I
nOo.2.0.1.g03859 Onchocerca ochengi nOo.2.0.1.g03859 I
nRc.2.0.1.g16639 Romanomermis culicivorax nRc.2.0.1.g16639 I
OESDEN_04341 Oesophagostomum dentatum OESDEN_04341 I
OFLC_0001450101 Onchocerca flexuosa OFLC_0001450101 I
PEQ_0000391501 Parascaris equorum PEQ_0000391501 I
PEQ_0000722401 Parascaris equorum PEQ_0000722401 I
PEQ_0000894301 Parascaris equorum PEQ_0000894301 I
Ppa-nhr-120 Pristionchus pacificus PPA00183 I
PPA06637 Pristionchus pacificus PPA06637 I
PPA16374 Pristionchus pacificus PPA16374 I
PPA20196 Pristionchus pacificus PPA20196 I
PPA21777 Pristionchus pacificus PPA21777 I
PPA22443 Pristionchus pacificus PPA22443 I
PPA24468 Pristionchus pacificus PPA24468 I
PPA24481 Pristionchus pacificus PPA24481 I
PPA29597 Pristionchus pacificus PPA29597 I
PTRK_0000194200 Parastrongyloides trichosuri PTRK_0000194200 I
PTRK_0000480700 Parastrongyloides trichosuri PTRK_0000480700 I
PTRK_0000720500 Parastrongyloides trichosuri PTRK_0000720500 I
PTRK_0000994100 Parastrongyloides trichosuri PTRK_0000994100 I
PTRK_0001020800 Parastrongyloides trichosuri PTRK_0001020800 I
PTRK_0001163100 Parastrongyloides trichosuri PTRK_0001163100 I
PTRK_0001312000 Parastrongyloides trichosuri PTRK_0001312000 I
RSKR_0000342500 Rhabditophanes kr3021 RSKR_0000342500 I
RSKR_0000625800 Rhabditophanes kr3021 RSKR_0000625800 I
RSKR_0001171300 Rhabditophanes kr3021 RSKR_0001171300 I
scaffold107-EXSNAP2012.33 Pristionchus exspectatus scaffold107-EXSNAP2012.33 I
scaffold251-EXSNAP2012.44 Pristionchus exspectatus scaffold251-EXSNAP2012.44 I
scaffold265-EXSNAP2012.2 Pristionchus exspectatus scaffold265-EXSNAP2012.2 I
scaffold290-EXSNAP2012.30 Pristionchus exspectatus scaffold290-EXSNAP2012.30 I
scaffold314-EXSNAP2012.19 Pristionchus exspectatus scaffold314-EXSNAP2012.19 I
scaffold384-EXSNAP2012.4 Pristionchus exspectatus scaffold384-EXSNAP2012.4 I
scaffold426-EXSNAP2012.35 Pristionchus exspectatus scaffold426-EXSNAP2012.35 I
scaffold43-EXSNAP2012.41 Pristionchus exspectatus scaffold43-EXSNAP2012.41 I
scaffold552-EXSNAP2012.17 Pristionchus exspectatus scaffold552-EXSNAP2012.17 I
scaffold552-EXSNAP2012.18 Pristionchus exspectatus scaffold552-EXSNAP2012.18 I
scaffold572-EXSNAP2012.7 Pristionchus exspectatus scaffold572-EXSNAP2012.7 I
scaffold584-EXSNAP2012.2 Pristionchus exspectatus scaffold584-EXSNAP2012.2 I
scaffold598-EXSNAP2012.5 Pristionchus exspectatus scaffold598-EXSNAP2012.5 I
scaffold605-EXSNAP2012.9 Pristionchus exspectatus scaffold605-EXSNAP2012.9 I
scaffold726-EXSNAP2012.5 Pristionchus exspectatus scaffold726-EXSNAP2012.5 I
scaffold826-EXSNAP2012.10 Pristionchus exspectatus scaffold826-EXSNAP2012.10 I
SMUV_0000475001 Syphacia muris SMUV_0000475001 I
SMUV_0000657401 Syphacia muris SMUV_0000657401 I
SMUV_0000708401 Syphacia muris SMUV_0000708401 I
SMUV_0000795201 Syphacia muris SMUV_0000795201 I
SPAL_0000231300 Strongyloides papillosus SPAL_0000231300 I
SPAL_0000490500 Strongyloides papillosus SPAL_0000490500 I
SPAL_0000841700 Strongyloides papillosus SPAL_0000841700 I
SPAL_0001084400 Strongyloides papillosus SPAL_0001084400 I
SPAL_0001084500 Strongyloides papillosus SPAL_0001084500 I
SPAL_0001099500 Strongyloides papillosus SPAL_0001099500 I
SPAL_0001238400 Strongyloides papillosus SPAL_0001238400 I
SPAL_0001637600 Strongyloides papillosus SPAL_0001637600 I
SPAL_0001712900 Strongyloides papillosus SPAL_0001712900 I
SSTP_0000055100 Strongyloides stercoralis SSTP_0000055100 I
SSTP_0000145700 Strongyloides stercoralis SSTP_0000145700 I
SSTP_0000408200 Strongyloides stercoralis SSTP_0000408200 I
SSTP_0000546600 Strongyloides stercoralis SSTP_0000546600 I
SSTP_0000769100 Strongyloides stercoralis SSTP_0000769100 I
SSTP_0001035300 Strongyloides stercoralis SSTP_0001035300 I
SSTP_0001081300 Strongyloides stercoralis SSTP_0001081300 I
SSTP_0001170700 Strongyloides stercoralis SSTP_0001170700 I
SSTP_0001253400 Strongyloides stercoralis SSTP_0001253400 I
SVE_0146100 Strongyloides venezuelensis SVE_0146100 I
SVE_0268000 Strongyloides venezuelensis SVE_0268000 I
SVE_0429000 Strongyloides venezuelensis SVE_0429000 I
SVE_0697700 Strongyloides venezuelensis SVE_0697700 I
SVE_0858700 Strongyloides venezuelensis SVE_0858700 I
SVE_0956400 Strongyloides venezuelensis SVE_0956400 I
SVE_1749000 Strongyloides venezuelensis SVE_1749000 I
SVE_1799100 Strongyloides venezuelensis SVE_1799100 I
SVE_1951500 Strongyloides venezuelensis SVE_1951500 I
SVUK_0000955601 Strongylus vulgaris SVUK_0000955601 I
TCLT_0000256201 Thelazia callipaeda TCLT_0000256201 I
TCLT_0000399401 Thelazia callipaeda TCLT_0000399401 I
TCLT_0000461101 Thelazia callipaeda TCLT_0000461101 I
TCLT_0000612301 Thelazia callipaeda TCLT_0000612301 I
TCNE_0001309701 Toxocara canis TCNE_0001309701 I
TELCIR_00491 Teladorsagia circumcincta TELCIR_00491 I
TELCIR_05987 Teladorsagia circumcincta TELCIR_05987 I
TMUE_s0002006800 Trichuris muris TMUE_s0002006800 I
WBGene00236987 Onchocerca volvulus WBGene00236987 I
WBGene00240403 Onchocerca volvulus WBGene00240403 I
WBGene00240560 Onchocerca volvulus WBGene00240560 I
WBGene00240723 Onchocerca volvulus WBGene00240723 I
WBGene00241993 Onchocerca volvulus WBGene00241993 I
WUBG_08038 Wuchereria bancrofti WUBG_08038 I