PK12240.1 (Cannabis sativa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 PK12240.1 T345103_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00		 Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.878 0.484
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.870 0.444
TB1
M01312_2.00 		Oryza sativa
GGSCCCCCYM
KRGGGGGSCC		 PBM
Lambert et al.(2019)
pTH8740 		0.842 0.484
For this family, TFs with SR scores > 0.822 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01314_2.00 TCP 4 129

DNA Binding Domains

Protein ID Domain From To Sequence
PK12240.1 TCP 4 129

Links

Other TCP family TFs
Other Cannabis sativa TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.923
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.842
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.903
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.956
TCP1 Arabidopsis thaliana AT1G67260 D 0.870
BRC2 Arabidopsis thaliana AT1G68800 I 0.957
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.949
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.896
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.827
Bo2g055640 Brassica oleracea Bo2g055640 I 0.862
Bo2g061250 Brassica oleracea Bo2g061250 I 0.887
Bo6g099040 Brassica oleracea Bo6g099040 I 0.875
Bo6g103670 Brassica oleracea Bo6g103670 I 0.903
Bra004097 Brassica rapa Bra004097 I 0.918
Bra004212 Brassica rapa Bra004212 I 0.900
Bra034010 Brassica rapa Bra034010 I 0.863
Bra038350 Brassica rapa Bra038350 I 0.887
PK19717.1 Cannabis sativa PK19717.1 D 0.878
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.888
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.951
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.951
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.881
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.910
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.920
Cla002355 Citrullus lanatus Cla002355 I 0.919
Cla007227 Citrullus lanatus Cla007227 I 0.896
Cla016709 Citrullus lanatus Cla016709 I 0.913
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.902
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.904
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.902
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.904
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.910
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.922
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.940
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.923
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.875
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.865
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.827
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.882
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.953
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.866
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.850
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.921
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.893
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.887
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.841
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.921
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.887
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.902
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.881
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.848
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.896
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.842
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.826
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.863
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.841
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.832
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.932
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.834
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.912
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.914
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.886
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.834
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.918
LjSGA_018294.2 Lotus japonicus LjSGA_018294.2 I 0.830
MDP0000173048 Malus domestica MDP0000173048 I 0.929
MDP0000272980 Malus domestica MDP0000272980 I 0.939
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.923
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.930
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.929
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.826
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.891
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.916
mgf019480m Mimulus guttatus mgf019480m I 0.889
mgf022233m Mimulus guttatus mgf022233m I 0.877
mgf024687m Mimulus guttatus mgf024687m I 0.863
mgf026636m Mimulus guttatus mgf026636m I 0.883
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.842
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.876
OBART03G31290 Oryza barthii OBART03G31290 I 0.823
OBART09G10040 Oryza barthii OBART09G10040 I 0.825
ORGLA03G0289500 Oryza glaberrima ORGLA03G0289500 I 0.823
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.842
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.825
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.842
OMERI03G27910 Oryza meridionalis OMERI03G27910 I 0.823
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.824
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.842
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.852
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.835
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.842
TB1 Oryza sativa OS03G0706500 D 0.842
OS09G0410500 Oryza sativa OS09G0410500 I 0.825
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.841
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.825
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.866
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.903
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.922
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.832
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.938
Pm015499 Prunus mume Pm015499 I 0.866
Pm029002 Prunus mume Pm029002 I 0.914
Pm030202 Prunus mume Pm030202 I 0.868
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.868
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.914
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.863
29738.m001041 Ricinus communis 29738.m001041 I 0.928
30167.m000856 Ricinus communis 30167.m000856 I 0.928
30174.m008721 Ricinus communis 30174.m008721 I 0.829
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.916
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.944
Si033183m.g Setaria italica Si033183m.g I 0.852
Solyc03g045030.1 Solanum lycopersicum Solyc03g045030.1 I 0.823
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.845
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.931
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.910
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.907
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.872
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.848
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.931
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.866
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.843
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.828
TCM_011874 Theobroma cacao TCM_011874 I 0.907
TCM_012252 Theobroma cacao TCM_012252 I 0.845
TCM_019518 Theobroma cacao TCM_019518 I 0.880
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.863
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.865
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.865
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.843
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.863
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.897
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.862
AC190734.2_FG003 Zea mays AC190734.2_FG003 I 0.824
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.852
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.869
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.825
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.854
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.825
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.861