SPU_021491 (Strongylocentrotus purpuratus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 SPU_021491 T223748_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.816 0.587
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.816 0.587
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.816 0.587
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.816 0.587
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.816 0.587
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.816 0.587
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.816 0.587
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.816 0.587
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.816 0.587
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.718 0.348
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.718 0.348
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.718 0.348
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SPU_021491-tr Homeodomain 116 161

Links

Other Homeodomain family TFs
Other Strongylocentrotus purpuratus TFs

1243 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001041 Ricinus communis 29738.m001041 I 0.000
30167.m000856 Ricinus communis 30167.m000856 I 0.000
30174.m008721 Ricinus communis 30174.m008721 I 0.000
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.000
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.000
TCP1 Arabidopsis thaliana AT1G67260 D 0.000
BRC2 Arabidopsis thaliana AT1G68800 I 0.000
Bo2g055640 Brassica oleracea Bo2g055640 I 0.000
Bo2g061250 Brassica oleracea Bo2g061250 I 0.000
Bo6g099040 Brassica oleracea Bo6g099040 I 0.000
Bo6g103670 Brassica oleracea Bo6g103670 I 0.000
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.000
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.000
Bra004097 Brassica rapa Bra004097 I 0.000
Bra004212 Brassica rapa Bra004212 I 0.000
Bra034010 Brassica rapa Bra034010 I 0.000
Bra038350 Brassica rapa Bra038350 I 0.000
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.000
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.000
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.000
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.000
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.000
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.000
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.000
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.000
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.000
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.000
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.000
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.000
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.000
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.000
Cla002355 Citrullus lanatus Cla002355 I 0.000
Cla007227 Citrullus lanatus Cla007227 I 0.000
Cla016709 Citrullus lanatus Cla016709 I 0.000
Cla019282 Citrullus lanatus Cla019282 N 0.000
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.000
Cucsa.198860 Cucumis sativus Cucsa.198860 N 0.000
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.000
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.000
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.000
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.000
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.000
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.000
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.000
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.000
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.000
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.000
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.000
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.000
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.000
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.000
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.000
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.000
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.000
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.000
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.000
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.000
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.000
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.000
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.000
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.000
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.000
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.000
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.000
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.000
MDP0000173048 Malus domestica MDP0000173048 I 0.000
MDP0000219838 Malus domestica MDP0000219838 N 0.000
MDP0000224810 Malus domestica MDP0000224810 N 0.000
MDP0000272980 Malus domestica MDP0000272980 I 0.000
mgf019480m Mimulus guttatus mgf019480m I 0.000
mgf022233m Mimulus guttatus mgf022233m I 0.000
mgf024687m Mimulus guttatus mgf024687m I 0.000
mgf026636m Mimulus guttatus mgf026636m I 0.000
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.000
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.000
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.000
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.000
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.000
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.000
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.000
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.000
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.000
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.000
PK12240.1 Cannabis sativa PK12240.1 D 0.000
PK19717.1 Cannabis sativa PK19717.1 D 0.000
Pm015499 Prunus mume Pm015499 I 0.000
Pm029002 Prunus mume Pm029002 I 0.000
Pm030202 Prunus mume Pm030202 I 0.000
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.000
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.000
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.000
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.000
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.000
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.000
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.000
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.000
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.000
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.000
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.000
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.000
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.000
Solyc03g045030.1 Solanum lycopersicum Solyc03g045030.1 I 0.000
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.000
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.000
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.000
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.000
TCM_011874 Theobroma cacao TCM_011874 I 0.000
TCM_019518 Theobroma cacao TCM_019518 I 0.000
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.000
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.000
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.000