gene23924-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene23924-v1.0-hybrid T258353_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.792 0.792
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna23924.1-v1.0-hybrid MADS box 170 218

Links

Other MADS box family TFs
Other Fragaria vesca TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.792
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.812
Bo2g104810 Brassica oleracea Bo2g104810 I 0.750
Bo9g078450 Brassica oleracea Bo9g078450 I 0.750
Bra018490 Brassica rapa Bra018490 I 0.771
Bra029469 Brassica rapa Bra029469 I 0.750
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.750
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.750
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.708
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.739
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.800
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.711
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.809
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.750
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.702
evm.TU.contig_25253.5 Carica papaya evm.TU.contig_25253.5 I 0.793
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.778
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.822
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.733
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.864
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.708
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.812
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.708
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.735
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.778
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.750
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.733
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.767
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.783
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.773
evm.TU.contig_40008 Carica papaya evm.TU.contig_40008 I 0.793
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.733
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.822
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.818
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.800
evm.TU.contig_46342 Carica papaya evm.TU.contig_46342 N 0.800
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.723
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.750
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.771
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.792
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.727
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.826
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.778
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.708
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.729
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.762
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.739
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.756
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.826
evm.TU.supercontig_30.163 Carica papaya evm.TU.supercontig_30.163 N 0.800
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.792
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.711
Ca_06495 Cicer arietinum Ca_06495 I 0.795
Ca_13275 Cicer arietinum Ca_13275 I 0.844
Cla005226 Citrullus lanatus Cla005226 I 0.822
Cla009163 Citrullus lanatus Cla009163 I 0.708
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.854
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.854
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.804
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.804
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.822
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.739
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.761
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.708
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.761
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.708
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.750
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.792
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.792
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.708
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.771
gene15899-v1.0-hybrid Fragaria vesca gene15899-v1.0-hybrid N 0.729
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.875
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.875
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.938
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.800
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.822
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.766
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.708
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.812
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.708
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.792
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.750
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.778
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.792
MDP0000846004 Malus domestica MDP0000846004 I 0.854
MDP0000925348 Malus domestica MDP0000925348 I 0.812
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.711
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.896
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.844
mgf026186m Mimulus guttatus mgf026186m I 0.750
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.711
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.854
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.875
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.854
Pm003257 Prunus mume Pm003257 I 0.787
Pm004396 Prunus mume Pm004396 I 0.844
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.844
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.787
30128.m008984 Ricinus communis 30128.m008984 I 0.812
30199.m000879 Ricinus communis 30199.m000879 I 0.830
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.833
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.792
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.792
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.750
TCM_025670 Theobroma cacao TCM_025670 I 0.771
TCM_025671 Theobroma cacao TCM_025671 I 0.745
TCM_026842 Theobroma cacao TCM_026842 I 0.812
TCM_026845 Theobroma cacao TCM_026845 I 0.708
TCM_042799 Theobroma cacao TCM_042799 I 0.750
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.896