cassava2484.valid.m1 (Manihot esculenta)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 cassava2484.valid.m1 T250467_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.866 0.683
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.866 0.683
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava2484.valid.m1 MADF 57 128
cassava2484.valid.m1 MADF 341 413

Links

Other MADF family TFs
Other Manihot esculenta TFs

159 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.907
OB02G33250 Oryza brachyantha OB02G33250 I 0.906
30206.m000769 Ricinus communis 30206.m000769 I 0.904
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.904
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.902
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.902
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.902
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.902
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.902
OB04G27270 Oryza brachyantha OB04G27270 I 0.900
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.900
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.899
Cla005046 Citrullus lanatus Cla005046 I 0.898
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.896
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.896
OBART04G20290 Oryza barthii OBART04G20290 I 0.896
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.896
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.896
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.896
OBART02G25970 Oryza barthii OBART02G25970 I 0.894
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.894
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.893
F775_26337 Aegilops tauschii F775_26337 I 0.893
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.893
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.892
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.892
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.892
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.892
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.892
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.891
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.891
Si012121m.g Setaria italica Si012121m.g I 0.891
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.890
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.890
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.890
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.889
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.888
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.888
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.887
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.887
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.887
Pm024289 Prunus mume Pm024289 I 0.886
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.886
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.886
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.886
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.885
Si034382m.g Setaria italica Si034382m.g I 0.885
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.885
MDP0000451038 Malus domestica MDP0000451038 I 0.883
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.883
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.882
MDP0000701272 Malus domestica MDP0000701272 I 0.882
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.882
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.882
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.881
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.880
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.880
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.880
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.880
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.879
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.879
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.879
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.879
TCM_015563 Theobroma cacao TCM_015563 I 0.879
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.878
Cla007910 Citrullus lanatus Cla007910 I 0.878
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.877
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.876
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.876
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.875
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.873
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.873
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.873
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.872
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.871
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.871
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.871
Bo6g049430 Brassica oleracea Bo6g049430 I 0.871
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.871
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.871
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.871
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.871
Bra040010 Brassica rapa Bra040010 I 0.871
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.871
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.870
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.870
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.869
TCM_001348 Theobroma cacao TCM_001348 I 0.869
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.869
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.869
30068.m002635 Ricinus communis 30068.m002635 I 0.868
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.866
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.866
PK26613.1 Cannabis sativa PK26613.1 I 0.865
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.865
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.865
mgf015314m Mimulus guttatus mgf015314m N 0.862
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.861
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.861
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.860
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.860
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.858
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.858
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.858
Si016578m.g Setaria italica Si016578m.g I 0.857
Pm001889 Prunus mume Pm001889 I 0.856
mgf004276m Mimulus guttatus mgf004276m I 0.855
Ca_04386 Cicer arietinum Ca_04386 I 0.854
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.854
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.853
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.853
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.851
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.848
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.848
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.847
Pm022570 Prunus mume Pm022570 I 0.847
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.847
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.847
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.846
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.846
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.846
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.845
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.841
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.840
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.840
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.839
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.837
MDP0000156139 Malus domestica MDP0000156139 I 0.836
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.835
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.832
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.832
Pm022572 Prunus mume Pm022572 I 0.832
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.831
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.831
TCM_035565 Theobroma cacao TCM_035565 I 0.831
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.830
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.830
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.827
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.827
PK24122.1 Cannabis sativa PK24122.1 I 0.826
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.825
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.824
MDP0000451107 Malus domestica MDP0000451107 I 0.824
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.824
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.824
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.824
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.823
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.823
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.823
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.823
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.823
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.821
29576.m000223 Ricinus communis 29576.m000223 I 0.820
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.817
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.816
Bra036731 Brassica rapa Bra036731 I 0.815
Bo8g027460 Brassica oleracea Bo8g027460 I 0.815
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.814
Ca_25135 Cicer arietinum Ca_25135 I 0.813