Gorai.009G253900 (Gossypium raimondii)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Gorai.009G253900 T250717_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.833 0.667
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.833 0.667
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G253900.1 MADF 58 129
Gorai.009G253900.1 MADF 389 460

Links

Other MADF family TFs
Other Gossypium raimondii TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.958
29576.m000223 Ricinus communis 29576.m000223 I 0.955
TCM_035565 Theobroma cacao TCM_035565 I 0.953
TCM_035571 Theobroma cacao TCM_035571 I 0.949
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.948
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.948
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.948
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.947
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.947
PK24122.1 Cannabis sativa PK24122.1 I 0.946
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.945
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.945
mgf021983m Mimulus guttatus mgf021983m I 0.945
Ca_04386 Cicer arietinum Ca_04386 I 0.945
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.943
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.942
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.942
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.941
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.941
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.941
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.940
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.940
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.939
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.939
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.939
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.939
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.938
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.938
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.938
mgf018892m Mimulus guttatus mgf018892m N 0.937
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.937
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.936
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.935
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.933
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.930
Cla007910 Citrullus lanatus Cla007910 I 0.928
MDP0000156139 Malus domestica MDP0000156139 I 0.927
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.927
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.927
Ca_04385 Cicer arietinum Ca_04385 I 0.927
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.926
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.926
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.926
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.926
Bra003703 Brassica rapa Bra003703 I 0.926
Bra015716 Brassica rapa Bra015716 I 0.926
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.926
Bo6g120870 Brassica oleracea Bo6g120870 I 0.926
Bo6g083690 Brassica oleracea Bo6g083690 I 0.926
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.925
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.925
Pm022572 Prunus mume Pm022572 I 0.925
Ca_25135 Cicer arietinum Ca_25135 I 0.925
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.924
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.924
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.923
Cla001992 Citrullus lanatus Cla001992 I 0.923
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.923
MDP0000451107 Malus domestica MDP0000451107 I 0.921
Bra008285 Brassica rapa Bra008285 I 0.919
PK26613.1 Cannabis sativa PK26613.1 I 0.919
Bra003702 Brassica rapa Bra003702 I 0.915
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.915
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.913
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.913
mgf015314m Mimulus guttatus mgf015314m N 0.909
30206.m000769 Ricinus communis 30206.m000769 I 0.904
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.903
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.902
Pm022570 Prunus mume Pm022570 I 0.901
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.901
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.899
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.899
TCM_001348 Theobroma cacao TCM_001348 I 0.896
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.896
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.895
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.893
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.893
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.893
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.891
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.890
OB04G27270 Oryza brachyantha OB04G27270 I 0.890
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.890
MDP0000701272 Malus domestica MDP0000701272 I 0.889
F775_26337 Aegilops tauschii F775_26337 I 0.888
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.888
Bo2g091240 Brassica oleracea Bo2g091240 I 0.888
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.888
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.887
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.887
OBART04G20290 Oryza barthii OBART04G20290 I 0.886
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.886
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.886
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.886
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.886
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.884
Bo8g027460 Brassica oleracea Bo8g027460 I 0.884
Bra036731 Brassica rapa Bra036731 I 0.884
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.884
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.884
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.884
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.884
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.884
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.883
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.883
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.882
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.881
Si012121m.g Setaria italica Si012121m.g I 0.880
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.880
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.879
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.879
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.879
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.879
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.878
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.878
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.877
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.877
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.877
mgf004276m Mimulus guttatus mgf004276m I 0.876
Cla005046 Citrullus lanatus Cla005046 I 0.876
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.875
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.874
Si034382m.g Setaria italica Si034382m.g I 0.874
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.874
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.874
Pm024289 Prunus mume Pm024289 I 0.874
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.874
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.873
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.872
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.872
OBART02G25970 Oryza barthii OBART02G25970 I 0.872
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.871
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.871
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.871
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.870
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.870
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.870
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.867
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.867
TCM_015563 Theobroma cacao TCM_015563 I 0.867
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.867
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.867
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.866
OB02G33250 Oryza brachyantha OB02G33250 I 0.866
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.866
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.865
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.865
MDP0000451038 Malus domestica MDP0000451038 I 0.865
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.861
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.861
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.861
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.861
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.861
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.860
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.860
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.860
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.860
F775_24861 Aegilops tauschii F775_24861 N 0.860
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.859
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.858
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.858
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.857
Si016578m.g Setaria italica Si016578m.g I 0.857
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.856
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.856
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.855
30068.m002635 Ricinus communis 30068.m002635 I 0.855
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.853
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.853
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.853
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.852
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.851
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.851
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.851
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.849
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.847
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.846
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.846
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.843
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.840
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.839
Bo6g049430 Brassica oleracea Bo6g049430 I 0.839
Bra040010 Brassica rapa Bra040010 I 0.839
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.839
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.833
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.833
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.830
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.827
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.827
AMTR_s00002p00271480 Amborella trichopoda AMTR_s00002p00271480 N 0.814