Gorai.009G253700 (Gossypium raimondii)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Gorai.009G253700 T250716_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.814 0.674
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.813 0.667
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.813 0.667
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G253700.1 MADF 103 173
Gorai.009G253700.1 MADF 432 507

Links

Other MADF family TFs
Other Gossypium raimondii TFs

185 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.958
TCM_035565 Theobroma cacao TCM_035565 I 0.953
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.952
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.946
PK24122.1 Cannabis sativa PK24122.1 I 0.946
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.946
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.946
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.944
Ca_04386 Cicer arietinum Ca_04386 I 0.944
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.943
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.943
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.942
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.941
29576.m000223 Ricinus communis 29576.m000223 I 0.939
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.939
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.938
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.938
TCM_035571 Theobroma cacao TCM_035571 I 0.936
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.935
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.935
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.934
Cla001992 Citrullus lanatus Cla001992 I 0.934
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.934
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.933
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.933
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.932
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.930
MDP0000156139 Malus domestica MDP0000156139 I 0.928
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.927
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.927
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.926
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.926
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.926
Bra003703 Brassica rapa Bra003703 I 0.926
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.926
Bo6g083690 Brassica oleracea Bo6g083690 I 0.926
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.926
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.926
Ca_25135 Cicer arietinum Ca_25135 I 0.925
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.925
mgf021983m Mimulus guttatus mgf021983m I 0.924
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.922
MDP0000451107 Malus domestica MDP0000451107 I 0.921
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.920
Bra015716 Brassica rapa Bra015716 I 0.919
Bo6g120870 Brassica oleracea Bo6g120870 I 0.919
Bra008285 Brassica rapa Bra008285 I 0.918
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.918
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.916
Pm022572 Prunus mume Pm022572 I 0.916
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.916
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.916
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.915
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.913
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.913
mgf018892m Mimulus guttatus mgf018892m N 0.913
Ca_04385 Cicer arietinum Ca_04385 I 0.910
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.908
Cla007910 Citrullus lanatus Cla007910 I 0.902
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.900
PK26613.1 Cannabis sativa PK26613.1 I 0.900
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.895
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.895
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.889
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.888
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.886
Bra003702 Brassica rapa Bra003702 I 0.884
30206.m000769 Ricinus communis 30206.m000769 I 0.883
TCM_001348 Theobroma cacao TCM_001348 I 0.882
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.879
mgf015314m Mimulus guttatus mgf015314m N 0.876
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.876
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.873
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.873
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.873
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.872
F775_26337 Aegilops tauschii F775_26337 I 0.872
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.871
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.871
Pm022570 Prunus mume Pm022570 I 0.871
Bo8g027460 Brassica oleracea Bo8g027460 I 0.869
Bra036731 Brassica rapa Bra036731 I 0.869
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.868
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.868
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.868
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.868
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.868
mgf004276m Mimulus guttatus mgf004276m I 0.867
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.867
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.867
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.866
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.866
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.865
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.865
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.863
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.862
OB04G27270 Oryza brachyantha OB04G27270 I 0.862
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.862
TCM_015563 Theobroma cacao TCM_015563 I 0.861
MDP0000701272 Malus domestica MDP0000701272 I 0.861
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.860
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.858
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.858
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.857
OBART04G20290 Oryza barthii OBART04G20290 I 0.857
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.857
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.857
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.857
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.857
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.857
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.855
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.855
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.855
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.855
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.855
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.855
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.855
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.855
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.854
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.853
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.853
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.852
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.851
Si012121m.g Setaria italica Si012121m.g I 0.850
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.850
Bo2g091240 Brassica oleracea Bo2g091240 I 0.850
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.849
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.848
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.848
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.847
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.847
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.847
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.847
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.847
30068.m002635 Ricinus communis 30068.m002635 I 0.847
Cla005046 Citrullus lanatus Cla005046 I 0.845
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.843
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.843
Si034382m.g Setaria italica Si034382m.g I 0.843
Pm024289 Prunus mume Pm024289 I 0.843
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.843
MDP0000451038 Malus domestica MDP0000451038 I 0.840
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.840
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.839
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.839
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.839
OBART02G25970 Oryza barthii OBART02G25970 I 0.838
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.838
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.838
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.838
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.838
Si016578m.g Setaria italica Si016578m.g I 0.837
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.837
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.836
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.835
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.835
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.835
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.835
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.833
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.832
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.832
OB02G33250 Oryza brachyantha OB02G33250 I 0.831
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.830
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.830
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.830
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.830
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.827
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.826
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.826
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.826
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.826
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.826
F775_24861 Aegilops tauschii F775_24861 N 0.825
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.825
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.825
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.823
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.823
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.820
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.819
Bo6g049430 Brassica oleracea Bo6g049430 I 0.817
Bra040010 Brassica rapa Bra040010 I 0.817
AT1G76880 Arabidopsis thaliana AT1G76880 D 0.814
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.813
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.813
AMTR_s00002p00271480 Amborella trichopoda AMTR_s00002p00271480 N 0.812