Bostr.3359s0047 (Boechera stricta)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Bostr.3359s0047 T250599_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.938 0.914
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.938 0.914
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.3359s0047.1.p MADF 75 146
Bostr.3359s0047.1.p MADF 444 516

Links

Other MADF family TFs
Other Boechera stricta TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo8g027460 Brassica oleracea Bo8g027460 I 0.970
Bra036731 Brassica rapa Bra036731 I 0.968
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.940
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.938
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.938
Bo6g049430 Brassica oleracea Bo6g049430 I 0.937
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.937
Bra040010 Brassica rapa Bra040010 I 0.937
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.935
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.931
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.931
Pm022570 Prunus mume Pm022570 I 0.930
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.927
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.926
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.926
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.925
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.923
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.922
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.922
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.922
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.921
Bo2g091240 Brassica oleracea Bo2g091240 I 0.920
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.918
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.918
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.917
30206.m000769 Ricinus communis 30206.m000769 I 0.917
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.917
MDP0000156139 Malus domestica MDP0000156139 I 0.916
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.916
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.916
Ca_25135 Cicer arietinum Ca_25135 I 0.915
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.915
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.914
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.913
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.912
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.912
Cla001992 Citrullus lanatus Cla001992 I 0.912
MDP0000451107 Malus domestica MDP0000451107 I 0.911
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.911
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.910
Bo6g083690 Brassica oleracea Bo6g083690 I 0.910
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.910
Bo6g120870 Brassica oleracea Bo6g120870 I 0.910
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.910
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.910
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.910
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.910
Bra003703 Brassica rapa Bra003703 I 0.910
Bra015716 Brassica rapa Bra015716 I 0.910
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.909
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.909
TCM_035565 Theobroma cacao TCM_035565 I 0.909
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.908
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.906
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.906
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.905
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.905
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.905
TCM_001348 Theobroma cacao TCM_001348 I 0.904
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.904
Cla007910 Citrullus lanatus Cla007910 I 0.904
Ca_04385 Cicer arietinum Ca_04385 I 0.903
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.903
Pm022572 Prunus mume Pm022572 I 0.903
Bra008285 Brassica rapa Bra008285 I 0.902
Ca_04386 Cicer arietinum Ca_04386 I 0.901
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.901
PK24122.1 Cannabis sativa PK24122.1 I 0.901
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.900
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.900
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.899
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.899
29576.m000223 Ricinus communis 29576.m000223 I 0.896
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.896
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.895
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.895
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.894
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.894
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.890
mgf021983m Mimulus guttatus mgf021983m I 0.889
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.888
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.888
Si012121m.g Setaria italica Si012121m.g I 0.888
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.887
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.887
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.887
OBART04G20290 Oryza barthii OBART04G20290 I 0.887
OB04G27270 Oryza brachyantha OB04G27270 I 0.887
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.887
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.887
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.886
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.886
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.886
PK26613.1 Cannabis sativa PK26613.1 I 0.886
Bra003702 Brassica rapa Bra003702 I 0.885
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.884
TCM_035571 Theobroma cacao TCM_035571 I 0.884
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.884
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.881
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.878
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.878
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.878
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.877
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.876
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.876
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.876
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.876
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.875
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.875
Pm024289 Prunus mume Pm024289 I 0.875
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.875
Si034382m.g Setaria italica Si034382m.g I 0.875
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.875
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.875
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.874
MDP0000451038 Malus domestica MDP0000451038 I 0.873
OB02G33250 Oryza brachyantha OB02G33250 I 0.872
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.871
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.871
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.871
F775_26337 Aegilops tauschii F775_26337 I 0.871
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.870
mgf018892m Mimulus guttatus mgf018892m N 0.870
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.869
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.869
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.869
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.869
TCM_015563 Theobroma cacao TCM_015563 I 0.868
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.868
Cla005046 Citrullus lanatus Cla005046 I 0.867
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.867
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.867
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.867
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.867
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.867
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.867
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.866
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.864
mgf004276m Mimulus guttatus mgf004276m I 0.863
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.862
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.862
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.862
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.862
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.862
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.862
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.862
mgf015314m Mimulus guttatus mgf015314m N 0.861
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.861
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.861
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.861
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.858
MDP0000701272 Malus domestica MDP0000701272 I 0.858
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.857
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.857
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.857
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.857
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.857
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.857
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.856
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.856
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.856
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.856
30068.m002635 Ricinus communis 30068.m002635 I 0.856
OBART02G25970 Oryza barthii OBART02G25970 I 0.856
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.854
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.854
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.854
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.854
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.851
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.851
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.851
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.849
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.844
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.844
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.842
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.842
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.842
Si016578m.g Setaria italica Si016578m.g I 0.840
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.839
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.837
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.831
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.831
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.831
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.828
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.828
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.824