Cla007910 (Citrullus lanatus)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cla007910 T250128_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.853 0.669
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.853 0.669
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla007910 MADF 60 131
Cla007910 MADF 341 413

Links

Other MADF family TFs
Other Citrullus lanatus TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.970
PK26613.1 Cannabis sativa PK26613.1 I 0.949
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.944
mgf015314m Mimulus guttatus mgf015314m N 0.942
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.942
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.941
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.941
TCM_001348 Theobroma cacao TCM_001348 I 0.940
29576.m000223 Ricinus communis 29576.m000223 I 0.938
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.935
Ca_04386 Cicer arietinum Ca_04386 I 0.935
mgf021983m Mimulus guttatus mgf021983m I 0.935
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.935
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.934
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.931
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.931
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.930
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.930
30206.m000769 Ricinus communis 30206.m000769 I 0.929
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.929
TCM_035571 Theobroma cacao TCM_035571 I 0.929
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.929
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.929
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.928
TCM_035565 Theobroma cacao TCM_035565 I 0.928
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.928
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.928
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.928
mgf018892m Mimulus guttatus mgf018892m N 0.926
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.925
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.925
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.924
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.923
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.923
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.921
PK24122.1 Cannabis sativa PK24122.1 I 0.921
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.920
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.920
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.918
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.914
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.914
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.914
Ca_25135 Cicer arietinum Ca_25135 I 0.913
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.912
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.911
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.911
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.910
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.910
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.910
Bra036731 Brassica rapa Bra036731 I 0.909
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.909
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.909
Pm022570 Prunus mume Pm022570 I 0.909
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.909
Bra015716 Brassica rapa Bra015716 I 0.909
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.909
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.909
Bo6g083690 Brassica oleracea Bo6g083690 I 0.909
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.909
Bo8g027460 Brassica oleracea Bo8g027460 I 0.909
Bo6g120870 Brassica oleracea Bo6g120870 I 0.909
Bra003703 Brassica rapa Bra003703 I 0.909
Bra003702 Brassica rapa Bra003702 I 0.907
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.906
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.906
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.906
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.906
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.906
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.906
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.906
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.905
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.904
Bo2g091240 Brassica oleracea Bo2g091240 I 0.902
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.902
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.902
Ca_04385 Cicer arietinum Ca_04385 I 0.900
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.900
Bra008285 Brassica rapa Bra008285 I 0.899
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.899
MDP0000156139 Malus domestica MDP0000156139 I 0.896
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.892
Pm022572 Prunus mume Pm022572 I 0.892
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.892
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.890
Cla001992 Citrullus lanatus Cla001992 I 0.890
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.890
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.889
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.887
MDP0000451107 Malus domestica MDP0000451107 I 0.887
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.885
Cla005046 Citrullus lanatus Cla005046 I 0.884
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.880
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.879
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.879
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.879
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.879
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.879
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.879
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.879
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.879
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.879
OB04G27270 Oryza brachyantha OB04G27270 I 0.879
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.879
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.878
OB02G33250 Oryza brachyantha OB02G33250 I 0.876
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.875
OBART04G20290 Oryza barthii OBART04G20290 I 0.874
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.874
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.874
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.874
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.874
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.874
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.874
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.874
MDP0000451038 Malus domestica MDP0000451038 I 0.873
Pm001889 Prunus mume Pm001889 I 0.873
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.872
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.872
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.872
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.871
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.871
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.871
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.871
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.871
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.871
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.870
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.870
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.869
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.869
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.869
Pm024289 Prunus mume Pm024289 I 0.869
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.869
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.869
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.869
Si012121m.g Setaria italica Si012121m.g I 0.868
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.868
MDP0000701272 Malus domestica MDP0000701272 I 0.865
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.865
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.865
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.865
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.863
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.862
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.862
TCM_015563 Theobroma cacao TCM_015563 I 0.862
F775_26337 Aegilops tauschii F775_26337 I 0.861
OBART02G25970 Oryza barthii OBART02G25970 I 0.861
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.861
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.861
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.861
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.861
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.858
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.858
Si016578m.g Setaria italica Si016578m.g I 0.857
Bo6g049430 Brassica oleracea Bo6g049430 I 0.857
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.857
Bra040010 Brassica rapa Bra040010 I 0.857
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.857
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.857
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.857
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.856
Si034382m.g Setaria italica Si034382m.g I 0.855
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.854
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.854
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.853
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.853
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.853
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.853
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.852
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.851
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.851
mgf004276m Mimulus guttatus mgf004276m I 0.850
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.849
30068.m002635 Ricinus communis 30068.m002635 I 0.849
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.849
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.849
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.849
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.849
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.848
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.848
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.847
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.847
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.847
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.847
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.847
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.846
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.846
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.844
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.837
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.824
F775_24861 Aegilops tauschii F775_24861 N 0.812