Bo8g027460 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo8g027460 T248001_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.935 0.878
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.935 0.878
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g027460.1 MADF 71 142
Bo8g027460.1 MADF 428 500

Links

Other MADF family TFs
Other Brassica oleracea TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.970
Bra036731 Brassica rapa Bra036731 I 0.970
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.937
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.935
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.935
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.934
Bo6g049430 Brassica oleracea Bo6g049430 I 0.933
Bra040010 Brassica rapa Bra040010 I 0.933
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.931
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.928
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.928
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.926
Pm022570 Prunus mume Pm022570 I 0.926
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.926
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.923
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.922
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.922
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.922
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.920
Ca_25135 Cicer arietinum Ca_25135 I 0.919
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.918
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.918
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.918
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.918
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.917
Bo2g091240 Brassica oleracea Bo2g091240 I 0.915
Bra015716 Brassica rapa Bra015716 I 0.915
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.915
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.915
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.915
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.915
Bo6g083690 Brassica oleracea Bo6g083690 I 0.915
Bo6g120870 Brassica oleracea Bo6g120870 I 0.915
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.915
Bra003703 Brassica rapa Bra003703 I 0.915
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.915
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.914
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.912
MDP0000156139 Malus domestica MDP0000156139 I 0.912
30206.m000769 Ricinus communis 30206.m000769 I 0.912
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.912
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.911
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.911
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.911
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.910
Cla007910 Citrullus lanatus Cla007910 I 0.909
Ca_04385 Cicer arietinum Ca_04385 I 0.908
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.908
Cla001992 Citrullus lanatus Cla001992 I 0.907
Bra008285 Brassica rapa Bra008285 I 0.907
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.907
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.906
MDP0000451107 Malus domestica MDP0000451107 I 0.906
TCM_035565 Theobroma cacao TCM_035565 I 0.904
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.904
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.903
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.901
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.901
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.900
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.900
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.900
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.900
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.899
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.899
TCM_001348 Theobroma cacao TCM_001348 I 0.899
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.899
Pm022572 Prunus mume Pm022572 I 0.897
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.897
Ca_04386 Cicer arietinum Ca_04386 I 0.896
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.895
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.895
PK24122.1 Cannabis sativa PK24122.1 I 0.895
mgf021983m Mimulus guttatus mgf021983m I 0.894
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.892
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.891
29576.m000223 Ricinus communis 29576.m000223 I 0.890
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.889
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.889
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.888
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.888
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.884
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.884
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.882
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.882
Si012121m.g Setaria italica Si012121m.g I 0.881
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.881
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.881
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.881
OB04G27270 Oryza brachyantha OB04G27270 I 0.881
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.881
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.881
OBART04G20290 Oryza barthii OBART04G20290 I 0.881
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.880
PK26613.1 Cannabis sativa PK26613.1 I 0.880
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.880
Bra003702 Brassica rapa Bra003702 I 0.879
MDP0000451038 Malus domestica MDP0000451038 I 0.879
TCM_035571 Theobroma cacao TCM_035571 I 0.878
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.878
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.878
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.878
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.875
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.874
Cla005046 Citrullus lanatus Cla005046 I 0.873
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.871
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.871
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.871
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.871
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.870
mgf004276m Mimulus guttatus mgf004276m I 0.870
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.870
mgf018892m Mimulus guttatus mgf018892m N 0.870
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.869
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.869
Si034382m.g Setaria italica Si034382m.g I 0.868
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.868
mgf015314m Mimulus guttatus mgf015314m N 0.868
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.868
Pm024289 Prunus mume Pm024289 I 0.868
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.868
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.868
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.867
OB02G33250 Oryza brachyantha OB02G33250 I 0.865
MDP0000701272 Malus domestica MDP0000701272 I 0.865
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.864
F775_26337 Aegilops tauschii F775_26337 I 0.864
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.864
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.864
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.864
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.864
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.863
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.862
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.862
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.862
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.862
TCM_015563 Theobroma cacao TCM_015563 I 0.861
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.861
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.860
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.860
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.860
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.860
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.860
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.859
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.859
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.858
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.857
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.855
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.855
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.855
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.855
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.855
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.855
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.855
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.854
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.854
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.854
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.850
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.850
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.850
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.849
30068.m002635 Ricinus communis 30068.m002635 I 0.849
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.849
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.849
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.849
OBART02G25970 Oryza barthii OBART02G25970 I 0.849
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.849
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.848
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.847
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.847
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.847
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.846
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.844
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.843
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.836
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.836
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.834
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.834
Si016578m.g Setaria italica Si016578m.g I 0.832
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.831
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.829
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.823
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.822
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.822
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.820
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.820
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.815
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.814
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.814