Gorai.008G262400 (Gossypium raimondii)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Gorai.008G262400 T250713_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.919 0.825
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.919 0.825
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.820 0.664
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G262400.1 MADF 107 178
Gorai.008G262400.1 MADF 548 618
Gorai.008G262400.2 MADF 107 178
Gorai.008G262400.2 MADF 548 618
Gorai.008G262400.3 MADF 107 178
Gorai.008G262400.3 MADF 548 618

Links

Other MADF family TFs
Other Gossypium raimondii TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_015563 Theobroma cacao TCM_015563 I 0.962
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.958
30068.m002635 Ricinus communis 30068.m002635 I 0.958
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.957
Pm024289 Prunus mume Pm024289 I 0.957
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.957
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.957
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.957
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.957
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.953
MDP0000451038 Malus domestica MDP0000451038 I 0.953
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.952
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.951
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.951
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.949
Si012121m.g Setaria italica Si012121m.g I 0.949
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.946
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.944
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.944
OB04G27270 Oryza brachyantha OB04G27270 I 0.944
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.944
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.944
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.944
Cla005046 Citrullus lanatus Cla005046 I 0.943
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.943
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.943
OBART04G20290 Oryza barthii OBART04G20290 I 0.942
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.942
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.942
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.942
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.942
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.941
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.941
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.941
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.941
Si034382m.g Setaria italica Si034382m.g I 0.941
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.941
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.941
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.939
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.939
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.939
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.938
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.938
F775_26337 Aegilops tauschii F775_26337 I 0.938
MDP0000701272 Malus domestica MDP0000701272 I 0.938
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.937
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.936
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.936
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.936
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.935
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.934
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.933
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.933
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.931
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.931
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.931
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.931
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.930
mgf004276m Mimulus guttatus mgf004276m I 0.930
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.930
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.929
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.928
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.926
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.926
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.926
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.926
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.922
Bo6g049430 Brassica oleracea Bo6g049430 I 0.921
Bra040010 Brassica rapa Bra040010 I 0.921
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.919
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.919
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.916
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.915
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.914
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.912
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.909
OB02G33250 Oryza brachyantha OB02G33250 I 0.907
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.905
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.905
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.903
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.903
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.903
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.903
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.903
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.901
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.901
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.899
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.899
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.899
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.896
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.896
Si016578m.g Setaria italica Si016578m.g I 0.895
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.895
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.895
MDP0000156139 Malus domestica MDP0000156139 I 0.895
OBART02G25970 Oryza barthii OBART02G25970 I 0.895
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.893
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.892
TCM_035565 Theobroma cacao TCM_035565 I 0.891
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.891
Pm022572 Prunus mume Pm022572 I 0.890
MDP0000451107 Malus domestica MDP0000451107 I 0.890
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.890
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.890
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.888
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.886
PK24122.1 Cannabis sativa PK24122.1 I 0.886
TCM_001348 Theobroma cacao TCM_001348 I 0.886
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.885
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.885
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.884
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.883
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.883
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.883
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.883
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.882
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.882
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.882
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.882
29576.m000223 Ricinus communis 29576.m000223 I 0.882
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.882
Pm022570 Prunus mume Pm022570 I 0.882
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.879
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.879
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.879
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.878
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.878
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.877
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.876
Ca_04386 Cicer arietinum Ca_04386 I 0.876
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.876
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.875
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.875
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.875
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.873
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.873
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.873
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.872
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.872
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.872
Bo6g083690 Brassica oleracea Bo6g083690 I 0.872
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.872
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.872
Bra003703 Brassica rapa Bra003703 I 0.871
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.871
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.870
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.870
F775_24861 Aegilops tauschii F775_24861 N 0.870
TCM_035571 Theobroma cacao TCM_035571 I 0.869
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.869
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.869
Ca_25135 Cicer arietinum Ca_25135 I 0.868
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.866
Cla001992 Citrullus lanatus Cla001992 I 0.866
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.865
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.864
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.864
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.864
mgf018892m Mimulus guttatus mgf018892m N 0.864
30206.m000769 Ricinus communis 30206.m000769 I 0.863
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.863
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.863
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.861
Bra015716 Brassica rapa Bra015716 I 0.860
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.860
Bo6g120870 Brassica oleracea Bo6g120870 I 0.860
Bra008285 Brassica rapa Bra008285 I 0.859
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.858
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.858
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.858
Bra036731 Brassica rapa Bra036731 I 0.854
Bo8g027460 Brassica oleracea Bo8g027460 I 0.854
Cla007910 Citrullus lanatus Cla007910 I 0.854
Pm001889 Prunus mume Pm001889 I 0.853
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.853
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.852
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.852
mgf021983m Mimulus guttatus mgf021983m I 0.851
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.847
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.846
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.845
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.839
Bo2g091240 Brassica oleracea Bo2g091240 I 0.838
PK26613.1 Cannabis sativa PK26613.1 I 0.835
Ca_04385 Cicer arietinum Ca_04385 I 0.833
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.825
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.823
AT1G76880 Arabidopsis thaliana AT1G76880 D 0.820
Bra003702 Brassica rapa Bra003702 I 0.818