Gorai.008G099700 (Gossypium raimondii)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Gorai.008G099700 T250710_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.851 0.674
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.851 0.674
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G099700.1 MADF 55 125
Gorai.008G099700.1 MADF 318 390

Links

Other MADF family TFs
Other Gossypium raimondii TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_001348 Theobroma cacao TCM_001348 I 0.966
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.958
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.957
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.954
30206.m000769 Ricinus communis 30206.m000769 I 0.948
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.948
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.945
Cla007910 Citrullus lanatus Cla007910 I 0.944
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.942
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.941
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.941
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.940
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.940
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.940
MDP0000156139 Malus domestica MDP0000156139 I 0.937
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.937
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.936
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.934
Pm022572 Prunus mume Pm022572 I 0.934
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.932
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.931
MDP0000451107 Malus domestica MDP0000451107 I 0.931
Ca_25135 Cicer arietinum Ca_25135 I 0.929
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.929
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.927
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.927
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.926
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.926
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.926
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.926
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.926
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.926
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.926
Bo6g083690 Brassica oleracea Bo6g083690 I 0.926
Bra003703 Brassica rapa Bra003703 I 0.926
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.924
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.924
Ca_04386 Cicer arietinum Ca_04386 I 0.923
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.922
Pm022570 Prunus mume Pm022570 I 0.922
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.921
PK26613.1 Cannabis sativa PK26613.1 I 0.921
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.921
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.918
Bra015716 Brassica rapa Bra015716 I 0.918
Bra008285 Brassica rapa Bra008285 I 0.918
Bo6g120870 Brassica oleracea Bo6g120870 I 0.918
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.917
TCM_035565 Theobroma cacao TCM_035565 I 0.915
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.915
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.915
Cla001992 Citrullus lanatus Cla001992 I 0.914
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.914
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.914
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.914
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.914
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.913
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.913
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.913
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.913
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.912
29576.m000223 Ricinus communis 29576.m000223 I 0.912
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.911
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.910
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.909
PK24122.1 Cannabis sativa PK24122.1 I 0.907
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.906
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.906
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.906
mgf021983m Mimulus guttatus mgf021983m I 0.904
Ca_04385 Cicer arietinum Ca_04385 I 0.901
Bo8g027460 Brassica oleracea Bo8g027460 I 0.900
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.900
TCM_035571 Theobroma cacao TCM_035571 I 0.900
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.899
mgf015314m Mimulus guttatus mgf015314m N 0.897
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.897
mgf018892m Mimulus guttatus mgf018892m N 0.896
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.896
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.896
Bra036731 Brassica rapa Bra036731 I 0.895
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.894
Bo2g091240 Brassica oleracea Bo2g091240 I 0.893
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.891
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.887
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.886
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.886
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.883
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.882
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.880
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.880
TCM_015563 Theobroma cacao TCM_015563 I 0.878
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.878
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.877
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.876
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.876
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.875
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.875
Pm001889 Prunus mume Pm001889 I 0.875
OBART02G25970 Oryza barthii OBART02G25970 I 0.875
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.875
F775_26337 Aegilops tauschii F775_26337 I 0.875
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.873
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.873
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.873
MDP0000701272 Malus domestica MDP0000701272 I 0.873
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.873
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.873
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.873
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.872
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.872
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.872
OB04G27270 Oryza brachyantha OB04G27270 I 0.872
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.871
Bra003702 Brassica rapa Bra003702 I 0.870
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.870
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.870
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.870
Cla005046 Citrullus lanatus Cla005046 I 0.870
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.869
OB02G33250 Oryza brachyantha OB02G33250 I 0.869
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.868
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.867
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.867
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.867
OBART04G20290 Oryza barthii OBART04G20290 I 0.867
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.867
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.867
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.866
30068.m002635 Ricinus communis 30068.m002635 I 0.866
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.865
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.865
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.865
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.865
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.864
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.864
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.864
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.864
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.864
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.864
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.864
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.864
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.864
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.862
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.862
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.862
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.862
Pm024289 Prunus mume Pm024289 I 0.862
Si016578m.g Setaria italica Si016578m.g I 0.861
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.861
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.861
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.861
Si012121m.g Setaria italica Si012121m.g I 0.861
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.860
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.860
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.860
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.860
MDP0000451038 Malus domestica MDP0000451038 I 0.859
mgf004276m Mimulus guttatus mgf004276m I 0.857
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.856
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.856
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.856
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.854
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.854
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.854
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.854
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.851
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.851
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.850
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.850
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.850
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.850
Bo6g049430 Brassica oleracea Bo6g049430 I 0.849
Bra040010 Brassica rapa Bra040010 I 0.849
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.849
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.849
Si034382m.g Setaria italica Si034382m.g I 0.847
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.846
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.844
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.840
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.840
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.828
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.825
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.825
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.824
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.818
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.818
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.814