Cagra.6133s0035 (Capsella grandiflora)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cagra.6133s0035 T250616_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.967 0.993
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.967 0.993
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.6133s0035.1.p MADF 75 145
Cagra.6133s0035.1.p MADF 460 532

Links

Other MADF family TFs
Other Capsella grandiflora TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.969
Bo6g049430 Brassica oleracea Bo6g049430 I 0.967
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.967
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.967
Bra040010 Brassica rapa Bra040010 I 0.967
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.967
mgf004276m Mimulus guttatus mgf004276m I 0.936
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.935
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.931
Bo8g027460 Brassica oleracea Bo8g027460 I 0.931
Bra036731 Brassica rapa Bra036731 I 0.928
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.923
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.918
F775_26337 Aegilops tauschii F775_26337 I 0.918
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.918
OB04G27270 Oryza brachyantha OB04G27270 I 0.916
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.916
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.916
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.916
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.916
OBART04G20290 Oryza barthii OBART04G20290 I 0.916
Si012121m.g Setaria italica Si012121m.g I 0.916
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.916
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.915
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.915
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.915
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.915
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.915
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.914
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.913
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.911
Cla005046 Citrullus lanatus Cla005046 I 0.910
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.909
MDP0000701272 Malus domestica MDP0000701272 I 0.909
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.909
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.909
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.909
OBART02G25970 Oryza barthii OBART02G25970 I 0.908
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.908
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.908
Pm024289 Prunus mume Pm024289 I 0.907
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.907
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.907
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.907
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.907
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.907
Si034382m.g Setaria italica Si034382m.g I 0.906
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.905
MDP0000451038 Malus domestica MDP0000451038 I 0.905
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.904
OB02G33250 Oryza brachyantha OB02G33250 I 0.904
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.902
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.902
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.902
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.902
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.901
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.901
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.901
TCM_015563 Theobroma cacao TCM_015563 I 0.901
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.901
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.899
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.899
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.899
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.897
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.897
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.897
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.897
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.897
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.897
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.897
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.897
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.896
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.895
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.894
30068.m002635 Ricinus communis 30068.m002635 I 0.893
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.893
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.893
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.893
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.892
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.892
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.892
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.892
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.892
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.892
30206.m000769 Ricinus communis 30206.m000769 I 0.890
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.890
MDP0000156139 Malus domestica MDP0000156139 I 0.889
Pm022570 Prunus mume Pm022570 I 0.889
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.888
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.887
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.887
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.886
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.886
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.885
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.884
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.884
Si016578m.g Setaria italica Si016578m.g I 0.883
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.882
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.882
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.882
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.881
MDP0000451107 Malus domestica MDP0000451107 I 0.881
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.880
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.878
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.876
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.876
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.875
TCM_035565 Theobroma cacao TCM_035565 I 0.875
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.875
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.874
TCM_001348 Theobroma cacao TCM_001348 I 0.874
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.873
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.872
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.872
Pm022572 Prunus mume Pm022572 I 0.871
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.871
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.871
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.870
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.870
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.869
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.868
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.868
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.868
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.867
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.865
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.864
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.864
PK24122.1 Cannabis sativa PK24122.1 I 0.864
Ca_04386 Cicer arietinum Ca_04386 I 0.864
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.863
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.861
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.861
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.861
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.860
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.860
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.860
29576.m000223 Ricinus communis 29576.m000223 I 0.858
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.857
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.857
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.856
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.856
Ca_25135 Cicer arietinum Ca_25135 I 0.856
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.856
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.855
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.855
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.854
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.854
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.853
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.853
Cla001992 Citrullus lanatus Cla001992 I 0.853
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.852
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.851
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.851
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.851
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.850
Bo6g083690 Brassica oleracea Bo6g083690 I 0.850
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.850
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.850
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.850
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.850
Bra015716 Brassica rapa Bra015716 I 0.850
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.850
Bo6g120870 Brassica oleracea Bo6g120870 I 0.850
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.849
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.849
Bra003703 Brassica rapa Bra003703 I 0.849
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.849
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.849
mgf021983m Mimulus guttatus mgf021983m I 0.848
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.848
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.848
Cla007910 Citrullus lanatus Cla007910 I 0.847
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.847
Bra003702 Brassica rapa Bra003702 I 0.844
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.844
TCM_035571 Theobroma cacao TCM_035571 I 0.843
Bo2g091240 Brassica oleracea Bo2g091240 I 0.842
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.842
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.840
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.840
Ca_04385 Cicer arietinum Ca_04385 I 0.838
Bra008285 Brassica rapa Bra008285 I 0.838
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.832
F775_24861 Aegilops tauschii F775_24861 N 0.829
mgf018892m Mimulus guttatus mgf018892m N 0.824
PK26613.1 Cannabis sativa PK26613.1 I 0.820
AMTR_s00002p00271480 Amborella trichopoda AMTR_s00002p00271480 N 0.818