Carubv10008638m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10008638m.g T250620_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.970 0.993
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.970 0.993
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10008638m MADF 76 147
Carubv10008638m MADF 459 531

Links

Other MADF family TFs
Other Capsella rubella TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.970
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.970
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.970
Bo6g049430 Brassica oleracea Bo6g049430 I 0.969
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.969
Bra040010 Brassica rapa Bra040010 I 0.969
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.940
Bo8g027460 Brassica oleracea Bo8g027460 I 0.937
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.936
Bra036731 Brassica rapa Bra036731 I 0.934
mgf004276m Mimulus guttatus mgf004276m I 0.931
OB04G27270 Oryza brachyantha OB04G27270 I 0.923
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.923
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.923
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.923
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.923
OBART04G20290 Oryza barthii OBART04G20290 I 0.923
Si012121m.g Setaria italica Si012121m.g I 0.923
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.923
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.922
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.922
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.922
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.922
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.918
Cla005046 Citrullus lanatus Cla005046 I 0.917
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.916
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.916
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.916
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.916
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.915
Pm024289 Prunus mume Pm024289 I 0.914
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.914
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.914
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.914
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.914
MDP0000451038 Malus domestica MDP0000451038 I 0.913
Si034382m.g Setaria italica Si034382m.g I 0.913
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.912
OB02G33250 Oryza brachyantha OB02G33250 I 0.912
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.911
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.911
F775_26337 Aegilops tauschii F775_26337 I 0.911
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.910
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.910
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.910
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.910
TCM_015563 Theobroma cacao TCM_015563 I 0.909
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.908
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.908
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.908
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.908
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.908
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.907
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.906
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.905
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.905
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.905
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.905
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.905
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.905
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.904
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.902
MDP0000701272 Malus domestica MDP0000701272 I 0.902
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.901
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.901
OBART02G25970 Oryza barthii OBART02G25970 I 0.901
30068.m002635 Ricinus communis 30068.m002635 I 0.901
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.900
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.900
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.900
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.900
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.900
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.900
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.900
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.899
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.899
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.899
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.899
Pm022570 Prunus mume Pm022570 I 0.898
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.897
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.897
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.895
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.895
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.894
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.893
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.892
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.892
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.890
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.890
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.888
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.888
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.888
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.887
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.885
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.884
Si016578m.g Setaria italica Si016578m.g I 0.883
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.882
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.882
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.882
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.881
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.880
30206.m000769 Ricinus communis 30206.m000769 I 0.880
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.880
MDP0000156139 Malus domestica MDP0000156139 I 0.879
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.877
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.877
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.876
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.874
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.874
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.874
MDP0000451107 Malus domestica MDP0000451107 I 0.871
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.871
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.867
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.865
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.865
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.865
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.864
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.864
TCM_035565 Theobroma cacao TCM_035565 I 0.864
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.864
TCM_001348 Theobroma cacao TCM_001348 I 0.863
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.862
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.861
Pm022572 Prunus mume Pm022572 I 0.861
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.860
Cla007910 Citrullus lanatus Cla007910 I 0.858
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.858
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.858
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.857
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.857
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.856
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.856
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.856
Bo2g091240 Brassica oleracea Bo2g091240 I 0.854
PK24122.1 Cannabis sativa PK24122.1 I 0.853
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.853
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.853
Ca_04386 Cicer arietinum Ca_04386 I 0.853
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.850
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.850
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.850
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.849
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.849
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.846
29576.m000223 Ricinus communis 29576.m000223 I 0.846
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.845
Ca_25135 Cicer arietinum Ca_25135 I 0.844
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.843
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.843
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.843
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.841
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.841
Cla001992 Citrullus lanatus Cla001992 I 0.841
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.840
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.840
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.840
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.839
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.839
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.839
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.838
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.838
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.838
Bo6g083690 Brassica oleracea Bo6g083690 I 0.838
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.838
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.838
Bo6g120870 Brassica oleracea Bo6g120870 I 0.838
Bra015716 Brassica rapa Bra015716 I 0.838
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.838
Bra003703 Brassica rapa Bra003703 I 0.837
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.837
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.836
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.836
mgf021983m Mimulus guttatus mgf021983m I 0.836
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.835
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.835
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.835
PK26613.1 Cannabis sativa PK26613.1 I 0.833
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.831
Bra003702 Brassica rapa Bra003702 I 0.831
TCM_035571 Theobroma cacao TCM_035571 I 0.830
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.830
Bra008285 Brassica rapa Bra008285 I 0.825
Ca_04385 Cicer arietinum Ca_04385 I 0.825
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.819
F775_24861 Aegilops tauschii F775_24861 N 0.815
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.814
Pm001889 Prunus mume Pm001889 I 0.812