cassava22363.valid.m1 (Manihot esculenta)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 cassava22363.valid.m1 T250466_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.906 0.816
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.906 0.816
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava22363.valid.m1 MADF 102 173
cassava22363.valid.m1 MADF 507 576

Links

Other MADF family TFs
Other Manihot esculenta TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.971
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.971
TCM_015563 Theobroma cacao TCM_015563 I 0.968
30068.m002635 Ricinus communis 30068.m002635 I 0.964
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.964
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.963
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.963
Pm024289 Prunus mume Pm024289 I 0.963
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.963
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.963
MDP0000451038 Malus domestica MDP0000451038 I 0.962
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.960
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.959
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.959
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.957
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.957
Si012121m.g Setaria italica Si012121m.g I 0.956
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.955
F775_26337 Aegilops tauschii F775_26337 I 0.953
OB04G27270 Oryza brachyantha OB04G27270 I 0.953
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.953
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.953
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.952
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.952
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.952
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.952
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.952
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.951
Cla005046 Citrullus lanatus Cla005046 I 0.951
OBART04G20290 Oryza barthii OBART04G20290 I 0.951
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.951
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.951
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.951
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.951
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.951
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.948
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.947
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.947
MDP0000701272 Malus domestica MDP0000701272 I 0.947
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.946
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.945
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.945
Si034382m.g Setaria italica Si034382m.g I 0.944
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.942
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.942
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.941
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.938
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.938
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.938
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.938
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.938
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.938
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.937
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.936
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.936
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.936
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.933
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.932
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.931
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.930
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.930
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.930
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.929
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.927
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.927
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.927
mgf004276m Mimulus guttatus mgf004276m I 0.926
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.926
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.924
OB02G33250 Oryza brachyantha OB02G33250 I 0.920
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.917
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.917
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.917
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.917
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.917
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.915
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.914
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.910
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.910
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.910
OBART02G25970 Oryza barthii OBART02G25970 I 0.910
Bo6g049430 Brassica oleracea Bo6g049430 I 0.909
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.909
Bra040010 Brassica rapa Bra040010 I 0.909
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.906
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.906
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.905
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.904
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.904
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.904
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.902
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.902
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.902
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.902
MDP0000156139 Malus domestica MDP0000156139 I 0.901
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.901
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.900
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.899
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.899
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.898
TCM_035565 Theobroma cacao TCM_035565 I 0.897
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.896
MDP0000451107 Malus domestica MDP0000451107 I 0.896
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.895
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.894
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.894
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.893
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.892
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.892
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.892
PK24122.1 Cannabis sativa PK24122.1 I 0.892
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.891
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.891
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.891
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.890
Si016578m.g Setaria italica Si016578m.g I 0.890
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.889
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.889
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.888
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.888
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.887
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.885
Pm022572 Prunus mume Pm022572 I 0.885
Ca_04386 Cicer arietinum Ca_04386 I 0.883
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.883
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.883
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.882
Pm022570 Prunus mume Pm022570 I 0.882
TCM_001348 Theobroma cacao TCM_001348 I 0.880
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.880
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.879
Cla001992 Citrullus lanatus Cla001992 I 0.879
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.879
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.878
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.878
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.878
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.878
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.878
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.878
Bra003703 Brassica rapa Bra003703 I 0.878
Bo6g083690 Brassica oleracea Bo6g083690 I 0.878
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.878
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.877
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.877
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.877
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.876
29576.m000223 Ricinus communis 29576.m000223 I 0.876
Ca_25135 Cicer arietinum Ca_25135 I 0.875
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.872
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.871
30206.m000769 Ricinus communis 30206.m000769 I 0.870
TCM_035571 Theobroma cacao TCM_035571 I 0.869
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.869
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.868
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.868
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.868
Bra008285 Brassica rapa Bra008285 I 0.867
Bo6g120870 Brassica oleracea Bo6g120870 I 0.867
Bra015716 Brassica rapa Bra015716 I 0.867
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.867
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.866
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.866
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.865
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.865
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.865
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.864
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.864
Bra036731 Brassica rapa Bra036731 I 0.862
Bo8g027460 Brassica oleracea Bo8g027460 I 0.862
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.862
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.859
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.859
mgf018892m Mimulus guttatus mgf018892m N 0.857
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.857
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.855
F775_24861 Aegilops tauschii F775_24861 N 0.855
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.853
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.848
Cla007910 Citrullus lanatus Cla007910 I 0.847
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.847
Pm001889 Prunus mume Pm001889 I 0.845
mgf021983m Mimulus guttatus mgf021983m I 0.844
Ca_04385 Cicer arietinum Ca_04385 I 0.842
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.838
Bo2g091240 Brassica oleracea Bo2g091240 I 0.830
PK26613.1 Cannabis sativa PK26613.1 I 0.827
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.816