cassava21480.m1 (Manihot esculenta)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 cassava21480.m1 T250461_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.857 0.674
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.857 0.674
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.812 0.696
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava21480.m1 MADF 63 133
cassava21480.m1 MADF 426 498

Links

Other MADF family TFs
Other Manihot esculenta TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.958
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.956
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.955
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.955
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.955
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.953
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.953
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.952
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.951
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.951
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.951
Bra003703 Brassica rapa Bra003703 I 0.950
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.949
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.949
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.949
Bra015716 Brassica rapa Bra015716 I 0.949
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.949
Bo6g083690 Brassica oleracea Bo6g083690 I 0.949
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.949
Bo6g120870 Brassica oleracea Bo6g120870 I 0.949
29576.m000223 Ricinus communis 29576.m000223 I 0.948
Ca_25135 Cicer arietinum Ca_25135 I 0.947
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.946
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.946
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.945
MDP0000156139 Malus domestica MDP0000156139 I 0.945
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.945
Bra008285 Brassica rapa Bra008285 I 0.944
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.944
TCM_035565 Theobroma cacao TCM_035565 I 0.943
Pm022570 Prunus mume Pm022570 I 0.943
TCM_035571 Theobroma cacao TCM_035571 I 0.943
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.943
Ca_04385 Cicer arietinum Ca_04385 I 0.943
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.942
MDP0000451107 Malus domestica MDP0000451107 I 0.942
Pm022572 Prunus mume Pm022572 I 0.942
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.942
Cla001992 Citrullus lanatus Cla001992 I 0.941
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.941
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.941
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.940
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.940
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.940
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.940
mgf021983m Mimulus guttatus mgf021983m I 0.939
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.939
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.939
Ca_04386 Cicer arietinum Ca_04386 I 0.939
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.938
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.938
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.938
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.938
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.936
30206.m000769 Ricinus communis 30206.m000769 I 0.936
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.936
PK24122.1 Cannabis sativa PK24122.1 I 0.934
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.934
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.931
mgf018892m Mimulus guttatus mgf018892m N 0.931
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.931
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.931
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.930
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.930
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.926
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.926
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.926
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.925
TCM_001348 Theobroma cacao TCM_001348 I 0.924
Bo2g091240 Brassica oleracea Bo2g091240 I 0.922
Cla007910 Citrullus lanatus Cla007910 I 0.921
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.921
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.921
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.920
Bra036731 Brassica rapa Bra036731 I 0.920
Bo8g027460 Brassica oleracea Bo8g027460 I 0.920
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.919
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.916
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.913
PK26613.1 Cannabis sativa PK26613.1 I 0.911
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.910
OBART04G20290 Oryza barthii OBART04G20290 I 0.909
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.909
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.909
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.909
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.909
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.908
Bra003702 Brassica rapa Bra003702 I 0.908
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.905
OB04G27270 Oryza brachyantha OB04G27270 I 0.905
MDP0000701272 Malus domestica MDP0000701272 I 0.904
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.903
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.902
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.902
F775_26337 Aegilops tauschii F775_26337 I 0.902
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.901
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.900
mgf004276m Mimulus guttatus mgf004276m I 0.900
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.900
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.900
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.900
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.900
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.900
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.899
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.899
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.898
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.897
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.896
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.896
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.896
Si012121m.g Setaria italica Si012121m.g I 0.896
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.896
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.895
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.895
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.894
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.894
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.894
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.894
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.894
Cla005046 Citrullus lanatus Cla005046 I 0.893
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.892
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.892
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.891
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.891
Si034382m.g Setaria italica Si034382m.g I 0.891
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.891
Pm024289 Prunus mume Pm024289 I 0.891
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.890
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.890
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.888
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.888
OBART02G25970 Oryza barthii OBART02G25970 I 0.888
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.888
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.888
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.887
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.887
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.887
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.887
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.886
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.885
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.885
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.885
TCM_015563 Theobroma cacao TCM_015563 I 0.885
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.885
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.884
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.884
F775_24861 Aegilops tauschii F775_24861 N 0.884
OB02G33250 Oryza brachyantha OB02G33250 I 0.883
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.883
MDP0000451038 Malus domestica MDP0000451038 I 0.883
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.882
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.882
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.881
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.879
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.879
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.879
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.879
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.878
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.878
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.878
mgf015314m Mimulus guttatus mgf015314m N 0.878
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.878
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.877
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.877
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.874
30068.m002635 Ricinus communis 30068.m002635 I 0.874
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.874
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.873
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.872
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.870
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.869
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.868
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.866
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.865
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.865
Si016578m.g Setaria italica Si016578m.g I 0.862
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.862
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.861
Bra040010 Brassica rapa Bra040010 I 0.861
Bo6g049430 Brassica oleracea Bo6g049430 I 0.861
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.858
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.858
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.857
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.857
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.854
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.854
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.852
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.849
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.841
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.832
AMTR_s00002p00271480 Amborella trichopoda AMTR_s00002p00271480 N 0.826
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.824
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.821
AT1G76880 Arabidopsis thaliana AT1G76880 D 0.812