Ciclev10018915m.g (Citrus clementina)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Ciclev10018915m.g T250645_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.919 0.818
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.919 0.818
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10018915m MADF 105 176
Ciclev10018915m MADF 539 609

Links

Other MADF family TFs
Other Citrus clementina TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.971
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.963
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.963
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.963
TCM_015563 Theobroma cacao TCM_015563 I 0.963
Si012121m.g Setaria italica Si012121m.g I 0.962
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.959
30068.m002635 Ricinus communis 30068.m002635 I 0.959
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.959
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.958
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.958
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.958
OB04G27270 Oryza brachyantha OB04G27270 I 0.958
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.958
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.958
Pm024289 Prunus mume Pm024289 I 0.958
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.958
MDP0000451038 Malus domestica MDP0000451038 I 0.957
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.957
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.957
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.957
OBART04G20290 Oryza barthii OBART04G20290 I 0.957
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.957
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.957
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.957
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.956
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.955
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.954
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.953
F775_26337 Aegilops tauschii F775_26337 I 0.953
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.953
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.952
MDP0000701272 Malus domestica MDP0000701272 I 0.951
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.951
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.951
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.951
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.951
Si034382m.g Setaria italica Si034382m.g I 0.948
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.946
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.946
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.945
Cla005046 Citrullus lanatus Cla005046 I 0.944
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.944
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.943
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.942
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.942
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.940
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.940
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.938
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.937
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.937
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.936
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.936
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.936
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.936
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.936
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.936
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.935
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.935
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.935
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.933
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.933
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.931
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.931
OB02G33250 Oryza brachyantha OB02G33250 I 0.928
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.928
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.927
mgf004276m Mimulus guttatus mgf004276m I 0.927
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.925
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.925
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.925
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.925
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.925
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.923
Bra040010 Brassica rapa Bra040010 I 0.922
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.922
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.922
Bo6g049430 Brassica oleracea Bo6g049430 I 0.922
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.919
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.919
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.918
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.918
OBART02G25970 Oryza barthii OBART02G25970 I 0.918
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.917
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.916
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.916
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.915
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.914
MDP0000156139 Malus domestica MDP0000156139 I 0.914
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.910
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.910
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.909
MDP0000451107 Malus domestica MDP0000451107 I 0.909
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.908
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.908
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.908
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.907
TCM_035565 Theobroma cacao TCM_035565 I 0.907
PK24122.1 Cannabis sativa PK24122.1 I 0.907
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.906
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.906
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.905
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.905
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.905
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.903
Pm022572 Prunus mume Pm022572 I 0.902
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.902
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.902
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.901
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.901
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.899
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.899
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.899
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.898
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.898
Ca_04386 Cicer arietinum Ca_04386 I 0.898
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.898
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.897
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.896
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.896
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.895
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.895
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.894
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.893
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.892
Ca_25135 Cicer arietinum Ca_25135 I 0.892
Cla001992 Citrullus lanatus Cla001992 I 0.891
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.891
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.889
Si016578m.g Setaria italica Si016578m.g I 0.889
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.889
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.889
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.889
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.887
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.887
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.887
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.887
Bo6g083690 Brassica oleracea Bo6g083690 I 0.887
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.887
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.887
Bra003703 Brassica rapa Bra003703 I 0.887
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.886
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.886
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.886
Pm022570 Prunus mume Pm022570 I 0.886
TCM_001348 Theobroma cacao TCM_001348 I 0.885
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.885
30206.m000769 Ricinus communis 30206.m000769 I 0.884
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.882
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.882
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.880
Bo8g027460 Brassica oleracea Bo8g027460 I 0.880
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.880
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.880
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.880
Bra036731 Brassica rapa Bra036731 I 0.880
Bra015716 Brassica rapa Bra015716 I 0.877
Bo6g120870 Brassica oleracea Bo6g120870 I 0.877
Bra008285 Brassica rapa Bra008285 I 0.876
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.875
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.873
29576.m000223 Ricinus communis 29576.m000223 I 0.873
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.872
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.870
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.870
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.870
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.869
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.869
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.869
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.869
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.867
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.866
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.866
mgf021983m Mimulus guttatus mgf021983m I 0.864
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.862
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.861
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.860
F775_24861 Aegilops tauschii F775_24861 N 0.859
TCM_035571 Theobroma cacao TCM_035571 I 0.859
Ca_04385 Cicer arietinum Ca_04385 I 0.854
Cla007910 Citrullus lanatus Cla007910 I 0.853
Bo2g091240 Brassica oleracea Bo2g091240 I 0.849
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.847
Pm001889 Prunus mume Pm001889 I 0.846
mgf018892m Mimulus guttatus mgf018892m N 0.845
PK26613.1 Cannabis sativa PK26613.1 I 0.844
Bra003702 Brassica rapa Bra003702 I 0.829
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.826
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.820
AMTR_s00002p00271480 Amborella trichopoda AMTR_s00002p00271480 N 0.813
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.812