AMTR_s00030p00088210 (Amborella trichopoda)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AMTR_s00030p00088210 T247844_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.878 0.754
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.878 0.754
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN16020 MADF 111 182
ERN16020 MADF 414 483

Links

Other MADF family TFs
Other Amborella trichopoda TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm024289 Prunus mume Pm024289 I 0.949
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.949
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.949
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.949
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.946
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.946
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.946
TCM_015563 Theobroma cacao TCM_015563 I 0.946
30068.m002635 Ricinus communis 30068.m002635 I 0.946
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.946
Si012121m.g Setaria italica Si012121m.g I 0.946
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.946
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.946
MDP0000451038 Malus domestica MDP0000451038 I 0.945
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.945
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.944
F775_26337 Aegilops tauschii F775_26337 I 0.942
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.942
OB04G27270 Oryza brachyantha OB04G27270 I 0.941
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.941
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.941
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.941
MDP0000701272 Malus domestica MDP0000701272 I 0.941
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.941
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.941
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.941
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.941
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.941
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.941
OBART04G20290 Oryza barthii OBART04G20290 I 0.941
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.940
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.939
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.938
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.938
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.938
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.938
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.938
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.938
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.938
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.937
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.937
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.936
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.936
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.936
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.935
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.935
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.935
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.934
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.933
Cla005046 Citrullus lanatus Cla005046 I 0.933
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.932
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.931
Si034382m.g Setaria italica Si034382m.g I 0.931
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.930
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.930
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.930
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.929
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.928
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.928
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.926
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.926
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.924
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.924
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.923
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.922
mgf004276m Mimulus guttatus mgf004276m I 0.916
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.916
OB02G33250 Oryza brachyantha OB02G33250 I 0.912
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.911
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.908
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.908
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.908
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.908
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.908
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.908
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.904
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.904
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.904
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.902
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.902
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.900
OBART02G25970 Oryza barthii OBART02G25970 I 0.900
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.900
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.900
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.895
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.895
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.895
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.893
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.891
Si016578m.g Setaria italica Si016578m.g I 0.890
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.889
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.887
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.887
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.884
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.883
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.883
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.882
Bo6g049430 Brassica oleracea Bo6g049430 I 0.881
Bra040010 Brassica rapa Bra040010 I 0.881
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.879
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.878
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.878
29576.m000223 Ricinus communis 29576.m000223 I 0.877
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.877
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.877
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.875
Pm022570 Prunus mume Pm022570 I 0.875
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.873
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.872
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.872
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.871
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.871
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.870
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.870
TCM_035571 Theobroma cacao TCM_035571 I 0.870
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.869
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.869
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.868
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.868
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.867
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.867
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.867
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.866
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.862
30206.m000769 Ricinus communis 30206.m000769 I 0.862
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.861
MDP0000156139 Malus domestica MDP0000156139 I 0.860
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.858
TCM_001348 Theobroma cacao TCM_001348 I 0.858
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.857
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.857
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.857
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.856
Pm022572 Prunus mume Pm022572 I 0.855
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.855
MDP0000451107 Malus domestica MDP0000451107 I 0.854
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.854
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.851
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.851
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.850
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.850
TCM_035565 Theobroma cacao TCM_035565 I 0.850
Cla007910 Citrullus lanatus Cla007910 I 0.848
Ca_04386 Cicer arietinum Ca_04386 I 0.846
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.845
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.844
PK24122.1 Cannabis sativa PK24122.1 I 0.843
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.843
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.842
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.842
F775_24861 Aegilops tauschii F775_24861 N 0.841
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.840
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.840
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.839
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.839
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.839
Pm001889 Prunus mume Pm001889 I 0.838
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.831
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.831
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.831
mgf021983m Mimulus guttatus mgf021983m I 0.830
Bo2g091240 Brassica oleracea Bo2g091240 I 0.828
mgf018892m Mimulus guttatus mgf018892m N 0.828
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.826
Cla001992 Citrullus lanatus Cla001992 I 0.826
Bo6g120870 Brassica oleracea Bo6g120870 I 0.825
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.825
Bo6g083690 Brassica oleracea Bo6g083690 I 0.825
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.825
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.825
Bra015716 Brassica rapa Bra015716 I 0.825
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.825
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.825
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.824
Bra003703 Brassica rapa Bra003703 I 0.824
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.823
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.823
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.823
Bra036731 Brassica rapa Bra036731 I 0.823
Bo8g027460 Brassica oleracea Bo8g027460 I 0.823
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.823
Ca_25135 Cicer arietinum Ca_25135 I 0.821
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.817
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.816
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.816
PK26613.1 Cannabis sativa PK26613.1 I 0.813
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.813