OB04G27270 (Oryza brachyantha)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 OB04G27270 T249528_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.920 0.787
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.920 0.787
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB04G27270.1 MADF 84 155
OB04G27270.1 MADF 472 541

Links

Other MADF family TFs
Other Oryza brachyantha TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.970
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.968
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.968
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.968
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.968
OBART04G20290 Oryza barthii OBART04G20290 I 0.968
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.967
Si012121m.g Setaria italica Si012121m.g I 0.967
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.965
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.964
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.964
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.964
Pm024289 Prunus mume Pm024289 I 0.963
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.963
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.963
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.963
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.963
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.962
F775_26337 Aegilops tauschii F775_26337 I 0.960
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.960
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.959
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.959
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.959
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.958
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.958
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.958
TCM_015563 Theobroma cacao TCM_015563 I 0.958
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.957
MDP0000451038 Malus domestica MDP0000451038 I 0.957
Cla005046 Citrullus lanatus Cla005046 I 0.956
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.956
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.956
MDP0000701272 Malus domestica MDP0000701272 I 0.955
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.955
Si034382m.g Setaria italica Si034382m.g I 0.955
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.954
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.954
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.953
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.953
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.953
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.953
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.953
30068.m002635 Ricinus communis 30068.m002635 I 0.953
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.953
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.953
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.953
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.953
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.953
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.952
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.952
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.952
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.951
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.950
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.950
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.949
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.949
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.949
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.946
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.945
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.944
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.944
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.943
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.942
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.942
OB02G33250 Oryza brachyantha OB02G33250 I 0.941
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.941
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.939
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.939
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.939
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.939
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.938
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.937
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.937
OBART02G25970 Oryza barthii OBART02G25970 I 0.933
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.933
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.932
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.932
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.930
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.928
mgf004276m Mimulus guttatus mgf004276m I 0.927
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.925
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.923
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.923
Bra040010 Brassica rapa Bra040010 I 0.922
Bo6g049430 Brassica oleracea Bo6g049430 I 0.922
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.921
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.921
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.921
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.920
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.920
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.918
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.916
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.914
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.914
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.913
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.913
Pm022572 Prunus mume Pm022572 I 0.913
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.912
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.911
MDP0000156139 Malus domestica MDP0000156139 I 0.910
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.908
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.908
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.908
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.908
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.907
MDP0000451107 Malus domestica MDP0000451107 I 0.906
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.905
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.904
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.903
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.903
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.902
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.901
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.900
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.900
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.900
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.899
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.898
TCM_035565 Theobroma cacao TCM_035565 I 0.898
29576.m000223 Ricinus communis 29576.m000223 I 0.898
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.898
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.898
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.898
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.897
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.896
mgf021983m Mimulus guttatus mgf021983m I 0.896
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.896
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.895
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.894
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.893
Ca_04386 Cicer arietinum Ca_04386 I 0.893
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.893
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.893
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.893
Si016578m.g Setaria italica Si016578m.g I 0.893
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.893
30206.m000769 Ricinus communis 30206.m000769 I 0.892
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.891
Pm022570 Prunus mume Pm022570 I 0.891
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.891
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.891
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.890
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.890
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.890
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.890
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.889
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.888
Bo6g083690 Brassica oleracea Bo6g083690 I 0.888
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.888
Ca_25135 Cicer arietinum Ca_25135 I 0.888
Bra015716 Brassica rapa Bra015716 I 0.888
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.888
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.888
Bo6g120870 Brassica oleracea Bo6g120870 I 0.888
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.888
TCM_001348 Theobroma cacao TCM_001348 I 0.888
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.888
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.887
Bra003703 Brassica rapa Bra003703 I 0.887
TCM_035571 Theobroma cacao TCM_035571 I 0.887
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.887
F775_24861 Aegilops tauschii F775_24861 N 0.885
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.884
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.884
PK24122.1 Cannabis sativa PK24122.1 I 0.884
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.884
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.884
Bo2g091240 Brassica oleracea Bo2g091240 I 0.883
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.883
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.883
Bo8g027460 Brassica oleracea Bo8g027460 I 0.881
Bra036731 Brassica rapa Bra036731 I 0.881
mgf018892m Mimulus guttatus mgf018892m N 0.879
Cla007910 Citrullus lanatus Cla007910 I 0.879
Ca_04385 Cicer arietinum Ca_04385 I 0.877
Bra008285 Brassica rapa Bra008285 I 0.877
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.874
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.873
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.873
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.873
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.872
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.872
Cla001992 Citrullus lanatus Cla001992 I 0.870
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.870
PK26613.1 Cannabis sativa PK26613.1 I 0.867
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.862
Pm001889 Prunus mume Pm001889 I 0.860
Bra003702 Brassica rapa Bra003702 I 0.860
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.839
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.831
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.828
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.825
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.825
mgf015314m Mimulus guttatus mgf015314m N 0.824