Pavir.Gb01188 (Panicum virgatum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Pavir.Gb01188 T250818_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.912 0.779
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.912 0.779
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb01188.1.p MADF 108 179
Pavir.Gb01188.1.p MADF 506 575
Pavir.Gb01188.2.p MADF 108 179
Pavir.Gb01188.2.p MADF 506 575
Pavir.Gb01188.3.p MADF 108 179
Pavir.Gb01188.3.p MADF 506 575

Links

Other MADF family TFs
Other Panicum virgatum TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.969
Si012121m.g Setaria italica Si012121m.g I 0.968
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.965
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.965
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.965
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.963
OB04G27270 Oryza brachyantha OB04G27270 I 0.963
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.963
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.963
OBART04G20290 Oryza barthii OBART04G20290 I 0.963
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.963
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.962
Pm024289 Prunus mume Pm024289 I 0.962
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.962
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.962
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.961
MDP0000701272 Malus domestica MDP0000701272 I 0.959
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.958
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.958
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.957
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.957
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.957
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.957
TCM_015563 Theobroma cacao TCM_015563 I 0.956
MDP0000451038 Malus domestica MDP0000451038 I 0.956
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.954
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.953
30068.m002635 Ricinus communis 30068.m002635 I 0.952
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.952
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.952
F775_26337 Aegilops tauschii F775_26337 I 0.952
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.952
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.952
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.951
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.951
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.951
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.951
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.950
Si034382m.g Setaria italica Si034382m.g I 0.950
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.948
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.948
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.948
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.948
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.948
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.947
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.946
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.946
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.946
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.946
Cla005046 Citrullus lanatus Cla005046 I 0.946
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.945
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.945
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.945
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.944
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.944
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.944
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.943
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.943
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.942
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.941
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.941
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.941
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.939
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.938
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.938
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.938
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.937
OB02G33250 Oryza brachyantha OB02G33250 I 0.936
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.935
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.933
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.933
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.933
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.933
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.927
OBART02G25970 Oryza barthii OBART02G25970 I 0.927
mgf004276m Mimulus guttatus mgf004276m I 0.926
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.925
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.923
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.922
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.921
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.920
Bo6g049430 Brassica oleracea Bo6g049430 I 0.918
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.918
Bra040010 Brassica rapa Bra040010 I 0.918
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.917
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.917
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.916
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.915
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.915
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.915
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.912
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.912
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.912
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.911
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.908
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.907
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.906
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.906
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.906
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.906
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.903
Si016578m.g Setaria italica Si016578m.g I 0.902
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.901
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.900
Pm022572 Prunus mume Pm022572 I 0.900
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.899
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.899
Pm022570 Prunus mume Pm022570 I 0.899
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.899
PK24122.1 Cannabis sativa PK24122.1 I 0.897
MDP0000156139 Malus domestica MDP0000156139 I 0.897
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.896
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.895
F775_24861 Aegilops tauschii F775_24861 N 0.895
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.894
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.894
MDP0000451107 Malus domestica MDP0000451107 I 0.893
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.893
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.892
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.892
mgf021983m Mimulus guttatus mgf021983m I 0.892
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.891
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.890
TCM_035565 Theobroma cacao TCM_035565 I 0.889
29576.m000223 Ricinus communis 29576.m000223 I 0.889
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.889
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.889
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.888
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.888
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.888
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.888
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.888
Ca_04386 Cicer arietinum Ca_04386 I 0.888
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.887
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.886
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.886
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.884
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.883
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.883
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.883
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.883
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.883
30206.m000769 Ricinus communis 30206.m000769 I 0.882
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.881
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.881
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.880
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.880
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.880
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.878
Bra003703 Brassica rapa Bra003703 I 0.877
Bra015716 Brassica rapa Bra015716 I 0.877
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.877
Bo6g120870 Brassica oleracea Bo6g120870 I 0.877
Bo6g083690 Brassica oleracea Bo6g083690 I 0.877
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.877
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.877
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.877
TCM_001348 Theobroma cacao TCM_001348 I 0.877
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.877
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.877
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.876
TCM_035571 Theobroma cacao TCM_035571 I 0.876
Cla001992 Citrullus lanatus Cla001992 I 0.875
Bra036731 Brassica rapa Bra036731 I 0.875
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.875
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.873
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.873
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.873
Ca_25135 Cicer arietinum Ca_25135 I 0.871
Bo8g027460 Brassica oleracea Bo8g027460 I 0.869
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.868
Cla007910 Citrullus lanatus Cla007910 I 0.868
Ca_04385 Cicer arietinum Ca_04385 I 0.867
Bra008285 Brassica rapa Bra008285 I 0.867
mgf018892m Mimulus guttatus mgf018892m N 0.867
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.867
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.863
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.861
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.861
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.860
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.859
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.859
PK26613.1 Cannabis sativa PK26613.1 I 0.855
Bo2g091240 Brassica oleracea Bo2g091240 I 0.853
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.850
Pm001889 Prunus mume Pm001889 I 0.850
Bra003702 Brassica rapa Bra003702 I 0.833
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.831
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.831
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.827
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.825
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.817