ORGLA02G0222200 (Oryza glaberrima)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 ORGLA02G0222200 T249590_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.901 0.739
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.901 0.739
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA02G0222200.1 MADF 103 173
ORGLA02G0222200.1 MADF 410 482

Links

Other MADF family TFs
Other Oryza glaberrima TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OBART02G25970 Oryza barthii OBART02G25970 I 0.971
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.969
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.969
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.969
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.969
OB02G33250 Oryza brachyantha OB02G33250 I 0.967
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.965
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.947
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.944
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.939
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.934
OB04G27270 Oryza brachyantha OB04G27270 I 0.933
MDP0000701272 Malus domestica MDP0000701272 I 0.933
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.933
F775_26337 Aegilops tauschii F775_26337 I 0.932
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.932
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.932
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.932
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.932
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.931
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.931
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.931
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.931
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.931
OBART04G20290 Oryza barthii OBART04G20290 I 0.931
Si034382m.g Setaria italica Si034382m.g I 0.930
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.928
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.927
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.927
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.927
Si012121m.g Setaria italica Si012121m.g I 0.927
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.926
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.926
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.926
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.926
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.926
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.926
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.926
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.925
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.925
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.925
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.925
Cla005046 Citrullus lanatus Cla005046 I 0.924
Pm024289 Prunus mume Pm024289 I 0.923
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.923
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.923
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.923
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.923
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.922
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.922
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.921
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.920
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.920
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.920
TCM_015563 Theobroma cacao TCM_015563 I 0.919
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.918
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.918
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.918
MDP0000451038 Malus domestica MDP0000451038 I 0.917
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.917
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.915
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.914
mgf004276m Mimulus guttatus mgf004276m I 0.914
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.913
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.913
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.913
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.913
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.913
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.912
30068.m002635 Ricinus communis 30068.m002635 I 0.911
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.910
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.910
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.910
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.909
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.909
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.908
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.907
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.905
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.904
Si016578m.g Setaria italica Si016578m.g I 0.903
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.903
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.903
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.902
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.902
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.902
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.901
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.901
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.901
Bra040010 Brassica rapa Bra040010 I 0.901
Bo6g049430 Brassica oleracea Bo6g049430 I 0.901
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.901
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.900
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.899
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.899
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.899
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.899
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.898
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.898
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.896
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.895
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.894
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.894
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.893
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.893
30206.m000769 Ricinus communis 30206.m000769 I 0.892
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.892
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.891
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.891
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.891
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.891
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.891
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.891
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.888
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.885
MDP0000156139 Malus domestica MDP0000156139 I 0.884
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.884
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.883
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.883
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.883
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.883
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.882
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.881
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.881
Pm022570 Prunus mume Pm022570 I 0.881
Pm022572 Prunus mume Pm022572 I 0.881
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.880
TCM_035565 Theobroma cacao TCM_035565 I 0.880
TCM_001348 Theobroma cacao TCM_001348 I 0.880
29576.m000223 Ricinus communis 29576.m000223 I 0.880
MDP0000451107 Malus domestica MDP0000451107 I 0.879
mgf021983m Mimulus guttatus mgf021983m I 0.879
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.878
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.878
Ca_25135 Cicer arietinum Ca_25135 I 0.878
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.877
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.876
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.875
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.875
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.873
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.873
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.873
Bra003702 Brassica rapa Bra003702 I 0.872
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.872
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.871
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.870
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.870
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.869
mgf018892m Mimulus guttatus mgf018892m N 0.868
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.867
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.867
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.867
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.866
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.866
TCM_035571 Theobroma cacao TCM_035571 I 0.866
Ca_04386 Cicer arietinum Ca_04386 I 0.863
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.863
F775_24861 Aegilops tauschii F775_24861 N 0.862
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.862
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.862
Cla007910 Citrullus lanatus Cla007910 I 0.861
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.861
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.861
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.860
Bo2g091240 Brassica oleracea Bo2g091240 I 0.860
Bo6g120870 Brassica oleracea Bo6g120870 I 0.858
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.858
Bra015716 Brassica rapa Bra015716 I 0.858
Bra003703 Brassica rapa Bra003703 I 0.858
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.858
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.858
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.858
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.858
Bo6g083690 Brassica oleracea Bo6g083690 I 0.858
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.857
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.857
Cla001992 Citrullus lanatus Cla001992 I 0.857
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.856
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.853
PK24122.1 Cannabis sativa PK24122.1 I 0.852
Bo8g027460 Brassica oleracea Bo8g027460 I 0.849
Bra036731 Brassica rapa Bra036731 I 0.849
PK26613.1 Cannabis sativa PK26613.1 I 0.846
Ca_04385 Cicer arietinum Ca_04385 I 0.846
Bra008285 Brassica rapa Bra008285 I 0.845
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.839
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.838
Pm001889 Prunus mume Pm001889 I 0.828