PK24122.1 (Cannabis sativa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 PK24122.1 T251177_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.848 0.688
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.848 0.688
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.834 0.746
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK24122.1 MADF 110 180
PK24122.1 MADF 544 617

Links

Other MADF family TFs
Other Cannabis sativa TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_04386 Cicer arietinum Ca_04386 I 0.965
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.962
TCM_035565 Theobroma cacao TCM_035565 I 0.960
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.957
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.956
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.952
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.952
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.951
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.951
29576.m000223 Ricinus communis 29576.m000223 I 0.948
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.948
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.948
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.947
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.947
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.946
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.946
Cla001992 Citrullus lanatus Cla001992 I 0.945
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.945
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.945
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.945
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.945
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.945
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.944
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.944
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.944
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.944
mgf021983m Mimulus guttatus mgf021983m I 0.944
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.943
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.943
MDP0000156139 Malus domestica MDP0000156139 I 0.942
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.941
Pm022572 Prunus mume Pm022572 I 0.941
TCM_035571 Theobroma cacao TCM_035571 I 0.941
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.941
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.940
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.940
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.940
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.940
Bo6g083690 Brassica oleracea Bo6g083690 I 0.940
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.940
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.940
Ca_25135 Cicer arietinum Ca_25135 I 0.939
Bra003703 Brassica rapa Bra003703 I 0.939
mgf018892m Mimulus guttatus mgf018892m N 0.936
MDP0000451107 Malus domestica MDP0000451107 I 0.936
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.936
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.935
Bra015716 Brassica rapa Bra015716 I 0.934
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.934
Bo6g120870 Brassica oleracea Bo6g120870 I 0.934
Bra008285 Brassica rapa Bra008285 I 0.933
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.932
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.931
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.930
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.929
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.928
Ca_04385 Cicer arietinum Ca_04385 I 0.926
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.925
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.925
Cla007910 Citrullus lanatus Cla007910 I 0.921
PK26613.1 Cannabis sativa PK26613.1 I 0.917
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.911
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.911
30206.m000769 Ricinus communis 30206.m000769 I 0.910
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.907
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.907
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.907
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.906
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.905
TCM_001348 Theobroma cacao TCM_001348 I 0.904
Bra003702 Brassica rapa Bra003702 I 0.904
Pm022570 Prunus mume Pm022570 I 0.902
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.901
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.900
Bra036731 Brassica rapa Bra036731 I 0.900
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.898
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.898
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.897
Si012121m.g Setaria italica Si012121m.g I 0.897
MDP0000701272 Malus domestica MDP0000701272 I 0.896
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.896
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.896
Bo8g027460 Brassica oleracea Bo8g027460 I 0.895
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.894
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.893
TCM_015563 Theobroma cacao TCM_015563 I 0.892
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.892
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.892
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.892
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.892
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.891
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.891
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.890
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.890
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.889
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.888
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.888
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.887
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.887
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.887
F775_26337 Aegilops tauschii F775_26337 I 0.887
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.886
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.885
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.885
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.885
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.885
OBART04G20290 Oryza barthii OBART04G20290 I 0.885
OB04G27270 Oryza brachyantha OB04G27270 I 0.884
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.884
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.883
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.882
Pm024289 Prunus mume Pm024289 I 0.882
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.882
mgf015314m Mimulus guttatus mgf015314m N 0.882
mgf004276m Mimulus guttatus mgf004276m I 0.882
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.882
30068.m002635 Ricinus communis 30068.m002635 I 0.881
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.881
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.881
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.881
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.879
Bo2g091240 Brassica oleracea Bo2g091240 I 0.878
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.877
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.876
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.876
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.876
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.876
MDP0000451038 Malus domestica MDP0000451038 I 0.875
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.874
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.873
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.873
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.872
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.872
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.872
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.872
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.872
Cla005046 Citrullus lanatus Cla005046 I 0.871
Si034382m.g Setaria italica Si034382m.g I 0.867
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.867
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.867
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.866
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.866
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.866
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.865
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.865
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.865
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.864
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.863
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.861
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.861
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.861
Si016578m.g Setaria italica Si016578m.g I 0.860
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.860
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.859
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.858
Bo6g049430 Brassica oleracea Bo6g049430 I 0.858
Bra040010 Brassica rapa Bra040010 I 0.858
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.857
F775_24861 Aegilops tauschii F775_24861 N 0.856
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.854
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.854
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.853
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.853
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.853
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.853
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.852
OBART02G25970 Oryza barthii OBART02G25970 I 0.852
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.852
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.849
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.848
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.848
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.846
OB02G33250 Oryza brachyantha OB02G33250 I 0.845
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.843
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.843
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.842
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.840
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.840
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.840
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.840
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.839
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.839
AT1G76880 Arabidopsis thaliana AT1G76880 D 0.834
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.829
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.829
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.826
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.824
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.819
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.816
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.816