Cla001992 (Citrullus lanatus)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cla001992 T250125_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.836 0.688
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.836 0.688
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.814 0.681
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla001992 MADF 81 151
Cla001992 MADF 475 547

Links

Other MADF family TFs
Other Citrullus lanatus TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.971
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.955
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.952
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.951
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.951
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.949
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.946
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.946
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.945
PK24122.1 Cannabis sativa PK24122.1 I 0.945
MDP0000156139 Malus domestica MDP0000156139 I 0.945
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.944
Ca_25135 Cicer arietinum Ca_25135 I 0.944
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.944
TCM_035565 Theobroma cacao TCM_035565 I 0.943
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.942
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.941
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.941
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.941
Bra003703 Brassica rapa Bra003703 I 0.941
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.941
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.941
Bo6g083690 Brassica oleracea Bo6g083690 I 0.941
MDP0000451107 Malus domestica MDP0000451107 I 0.941
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.941
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.940
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.939
Ca_04386 Cicer arietinum Ca_04386 I 0.939
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.938
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.937
Pm022572 Prunus mume Pm022572 I 0.937
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.937
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.937
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.936
Bra015716 Brassica rapa Bra015716 I 0.935
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.935
Bo6g120870 Brassica oleracea Bo6g120870 I 0.935
Bra008285 Brassica rapa Bra008285 I 0.935
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.935
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.934
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.934
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.934
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.933
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.933
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.933
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.933
Ca_04385 Cicer arietinum Ca_04385 I 0.930
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.930
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.927
29576.m000223 Ricinus communis 29576.m000223 I 0.926
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.925
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.925
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.924
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.923
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.921
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.921
TCM_035571 Theobroma cacao TCM_035571 I 0.920
mgf021983m Mimulus guttatus mgf021983m I 0.918
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.915
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.914
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.913
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.912
Bra036731 Brassica rapa Bra036731 I 0.912
TCM_001348 Theobroma cacao TCM_001348 I 0.911
30206.m000769 Ricinus communis 30206.m000769 I 0.909
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.909
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.908
Bo8g027460 Brassica oleracea Bo8g027460 I 0.907
Pm022570 Prunus mume Pm022570 I 0.907
Bo2g091240 Brassica oleracea Bo2g091240 I 0.907
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.903
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.901
mgf018892m Mimulus guttatus mgf018892m N 0.898
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.896
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.896
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.896
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.896
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.896
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.895
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.891
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.891
Cla007910 Citrullus lanatus Cla007910 I 0.890
Bra003702 Brassica rapa Bra003702 I 0.888
mgf004276m Mimulus guttatus mgf004276m I 0.888
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.888
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.885
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.883
PK26613.1 Cannabis sativa PK26613.1 I 0.882
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.879
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.879
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.879
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.879
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.877
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.877
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.876
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.876
Si012121m.g Setaria italica Si012121m.g I 0.875
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.875
F775_26337 Aegilops tauschii F775_26337 I 0.874
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.874
TCM_015563 Theobroma cacao TCM_015563 I 0.873
MDP0000701272 Malus domestica MDP0000701272 I 0.873
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.872
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.871
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.871
OBART04G20290 Oryza barthii OBART04G20290 I 0.871
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.871
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.871
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.870
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.870
OB04G27270 Oryza brachyantha OB04G27270 I 0.870
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.870
Si034382m.g Setaria italica Si034382m.g I 0.867
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.867
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.867
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.867
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.867
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.867
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.866
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.864
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.864
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.864
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.864
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.863
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.862
30068.m002635 Ricinus communis 30068.m002635 I 0.861
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.860
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.860
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.860
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.859
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.857
OBART02G25970 Oryza barthii OBART02G25970 I 0.857
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.857
Pm024289 Prunus mume Pm024289 I 0.857
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.857
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.857
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.856
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.856
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.856
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.856
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.856
MDP0000451038 Malus domestica MDP0000451038 I 0.854
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.854
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.854
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.853
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.853
F775_24861 Aegilops tauschii F775_24861 N 0.851
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.851
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.850
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.850
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.850
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.850
OB02G33250 Oryza brachyantha OB02G33250 I 0.850
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.849
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.849
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.849
Bra040010 Brassica rapa Bra040010 I 0.848
Bo6g049430 Brassica oleracea Bo6g049430 I 0.848
Cla005046 Citrullus lanatus Cla005046 I 0.847
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.846
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.845
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.845
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.845
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.845
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.845
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.845
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.844
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.844
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.841
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.841
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.841
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.841
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.837
Si016578m.g Setaria italica Si016578m.g I 0.837
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.837
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.836
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.836
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.836
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.835
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.830
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.828
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.827
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.826
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.825
mgf015314m Mimulus guttatus mgf015314m N 0.824
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.824
AT1G76880 Arabidopsis thaliana AT1G76880 D 0.814