Sb01g017120 (Sorghum bicolor)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Sb01g017120 T249765_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.911 0.768
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.911 0.768
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb01g017120.1 MADF 120 191
Sb01g017120.1 MADF 495 568

Links

Other MADF family TFs
Other Sorghum bicolor TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.959
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.959
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.957
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.956
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.954
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.952
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.952
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.952
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.952
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.952
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.948
Si012121m.g Setaria italica Si012121m.g I 0.944
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.944
OB04G27270 Oryza brachyantha OB04G27270 I 0.944
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.944
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.944
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.944
30068.m002635 Ricinus communis 30068.m002635 I 0.943
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.943
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.942
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.942
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.942
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.942
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.942
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.942
OBART04G20290 Oryza barthii OBART04G20290 I 0.942
Pm024289 Prunus mume Pm024289 I 0.941
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.941
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.941
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.941
MDP0000451038 Malus domestica MDP0000451038 I 0.940
MDP0000701272 Malus domestica MDP0000701272 I 0.939
Si034382m.g Setaria italica Si034382m.g I 0.939
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.939
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.939
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.939
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.938
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.938
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.938
F775_26337 Aegilops tauschii F775_26337 I 0.938
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.937
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.937
TCM_015563 Theobroma cacao TCM_015563 I 0.937
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.937
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.937
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.936
mgf004276m Mimulus guttatus mgf004276m I 0.936
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.936
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.935
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.934
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.933
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.931
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.931
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.930
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.930
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.929
Cla005046 Citrullus lanatus Cla005046 I 0.929
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.926
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.924
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.924
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.920
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.919
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.918
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.918
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.917
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.917
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.917
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.917
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.916
OB02G33250 Oryza brachyantha OB02G33250 I 0.916
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.915
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.915
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.914
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.914
Bo6g049430 Brassica oleracea Bo6g049430 I 0.913
Bra040010 Brassica rapa Bra040010 I 0.913
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.912
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.912
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.912
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.912
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.912
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.911
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.911
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.910
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.908
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.907
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.907
Si016578m.g Setaria italica Si016578m.g I 0.905
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.904
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.904
OBART02G25970 Oryza barthii OBART02G25970 I 0.904
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.904
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.903
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.903
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.903
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.903
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.902
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.900
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.900
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.899
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.899
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.899
MDP0000156139 Malus domestica MDP0000156139 I 0.897
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.897
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.895
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.895
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.895
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.895
TCM_035565 Theobroma cacao TCM_035565 I 0.894
MDP0000451107 Malus domestica MDP0000451107 I 0.893
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.893
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.891
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.891
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.890
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.890
30206.m000769 Ricinus communis 30206.m000769 I 0.888
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.888
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.887
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.885
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.885
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.885
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.884
Pm022570 Prunus mume Pm022570 I 0.883
29576.m000223 Ricinus communis 29576.m000223 I 0.882
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.882
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.881
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.881
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.881
Pm022572 Prunus mume Pm022572 I 0.881
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.879
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.879
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.879
PK24122.1 Cannabis sativa PK24122.1 I 0.879
Cla001992 Citrullus lanatus Cla001992 I 0.879
Ca_04386 Cicer arietinum Ca_04386 I 0.879
F775_24861 Aegilops tauschii F775_24861 N 0.878
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.878
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.877
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.877
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.876
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.875
Bo6g120870 Brassica oleracea Bo6g120870 I 0.875
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.875
Bra015716 Brassica rapa Bra015716 I 0.875
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.875
Bo6g083690 Brassica oleracea Bo6g083690 I 0.875
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.875
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.875
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.875
Bra003703 Brassica rapa Bra003703 I 0.874
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.874
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.874
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.873
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.873
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.873
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.873
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.873
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.872
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.872
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.872
Ca_25135 Cicer arietinum Ca_25135 I 0.871
TCM_035571 Theobroma cacao TCM_035571 I 0.869
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.868
Bo8g027460 Brassica oleracea Bo8g027460 I 0.868
Bra036731 Brassica rapa Bra036731 I 0.868
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.868
Pm001889 Prunus mume Pm001889 I 0.867
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.867
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.866
mgf021983m Mimulus guttatus mgf021983m I 0.865
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.865
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.864
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.864
TCM_001348 Theobroma cacao TCM_001348 I 0.864
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.863
Bra008285 Brassica rapa Bra008285 I 0.863
Ca_04385 Cicer arietinum Ca_04385 I 0.862
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.861
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.857
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.856
Cla007910 Citrullus lanatus Cla007910 I 0.854
Bo2g091240 Brassica oleracea Bo2g091240 I 0.851
mgf018892m Mimulus guttatus mgf018892m N 0.850
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.846
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.845
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.843
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.837
PK26613.1 Cannabis sativa PK26613.1 I 0.836
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.835
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.835
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.835
AMTR_s00002p00271480 Amborella trichopoda AMTR_s00002p00271480 N 0.834
Bra003702 Brassica rapa Bra003702 I 0.832
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.818