cassava16715.m1 (Manihot esculenta)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 cassava16715.m1 T250458_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.859 0.701
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.859 0.701
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava16715.m1 MADF 58 128
cassava16715.m1 MADF 407 480

Links

Other MADF family TFs
Other Manihot esculenta TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.955
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.952
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.951
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.951
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.950
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.950
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.950
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.948
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.948
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.947
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.946
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.945
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.945
Pm022572 Prunus mume Pm022572 I 0.945
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.945
MDP0000156139 Malus domestica MDP0000156139 I 0.944
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.943
Bo6g083690 Brassica oleracea Bo6g083690 I 0.941
Bra015716 Brassica rapa Bra015716 I 0.941
29576.m000223 Ricinus communis 29576.m000223 I 0.941
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.941
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.941
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.941
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.941
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.941
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.941
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.941
Ca_04385 Cicer arietinum Ca_04385 I 0.941
Bo6g120870 Brassica oleracea Bo6g120870 I 0.941
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.941
Bra003703 Brassica rapa Bra003703 I 0.941
MDP0000451107 Malus domestica MDP0000451107 I 0.941
TCM_035565 Theobroma cacao TCM_035565 I 0.941
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.940
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.938
Cla001992 Citrullus lanatus Cla001992 I 0.937
Ca_25135 Cicer arietinum Ca_25135 I 0.937
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.937
mgf021983m Mimulus guttatus mgf021983m I 0.936
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.936
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.935
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.935
PK24122.1 Cannabis sativa PK24122.1 I 0.935
Bra008285 Brassica rapa Bra008285 I 0.935
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.935
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.934
TCM_035571 Theobroma cacao TCM_035571 I 0.933
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.933
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.933
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.933
Ca_04386 Cicer arietinum Ca_04386 I 0.933
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.932
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.932
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.931
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.931
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.930
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.927
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.927
30206.m000769 Ricinus communis 30206.m000769 I 0.927
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.926
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.925
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.925
Bra036731 Brassica rapa Bra036731 I 0.925
TCM_001348 Theobroma cacao TCM_001348 I 0.924
Pm022570 Prunus mume Pm022570 I 0.924
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.923
Bo8g027460 Brassica oleracea Bo8g027460 I 0.922
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.921
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.921
mgf018892m Mimulus guttatus mgf018892m N 0.920
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.916
Bo2g091240 Brassica oleracea Bo2g091240 I 0.916
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.915
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.913
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.913
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.913
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.913
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.913
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.913
OBART04G20290 Oryza barthii OBART04G20290 I 0.913
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.912
OB04G27270 Oryza brachyantha OB04G27270 I 0.912
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.911
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.911
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.910
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.909
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.908
Si012121m.g Setaria italica Si012121m.g I 0.908
Cla007910 Citrullus lanatus Cla007910 I 0.906
F775_26337 Aegilops tauschii F775_26337 I 0.905
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.905
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.904
MDP0000701272 Malus domestica MDP0000701272 I 0.904
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.903
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.903
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.903
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.903
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.903
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.903
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.901
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.901
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.901
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.900
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.900
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.900
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.899
Bra003702 Brassica rapa Bra003702 I 0.899
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.898
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.898
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.898
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.898
PK26613.1 Cannabis sativa PK26613.1 I 0.897
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.895
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.895
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.894
Pm024289 Prunus mume Pm024289 I 0.894
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.894
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.894
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.893
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.891
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.891
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.890
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.889
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.888
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.888
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.888
Cla005046 Citrullus lanatus Cla005046 I 0.888
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.888
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.887
Si034382m.g Setaria italica Si034382m.g I 0.886
mgf004276m Mimulus guttatus mgf004276m I 0.886
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.886
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.885
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.885
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.885
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.883
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.882
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.882
F775_24861 Aegilops tauschii F775_24861 N 0.881
TCM_015563 Theobroma cacao TCM_015563 I 0.880
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.879
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.879
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.879
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.878
MDP0000451038 Malus domestica MDP0000451038 I 0.878
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.874
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.873
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.873
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.873
OBART02G25970 Oryza barthii OBART02G25970 I 0.873
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.872
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.872
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.870
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.870
Bra040010 Brassica rapa Bra040010 I 0.869
Bo6g049430 Brassica oleracea Bo6g049430 I 0.869
30068.m002635 Ricinus communis 30068.m002635 I 0.868
OB02G33250 Oryza brachyantha OB02G33250 I 0.867
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.867
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.867
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.867
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.867
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.866
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.864
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.864
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.864
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.864
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.863
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.863
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.863
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.863
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.863
mgf015314m Mimulus guttatus mgf015314m N 0.863
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.862
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.861
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.859
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.859
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.856
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.856
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.856
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.854
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.852
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.849
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.848
Si016578m.g Setaria italica Si016578m.g I 0.847
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.845
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.842
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.839
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.829
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.818
AMTR_s00002p00271480 Amborella trichopoda AMTR_s00002p00271480 N 0.812