Ciclev10000627m.g (Citrus clementina)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Ciclev10000627m.g T250637_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.873 0.696
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.873 0.696
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.815 0.674
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10000627m MADF 85 155
Ciclev10000627m MADF 429 501

Links

Other MADF family TFs
Other Citrus clementina TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.971
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.957
Ca_04386 Cicer arietinum Ca_04386 I 0.953
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.952
TCM_035565 Theobroma cacao TCM_035565 I 0.951
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.950
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.950
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.950
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.949
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.949
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.948
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.947
29576.m000223 Ricinus communis 29576.m000223 I 0.947
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.945
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.945
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.945
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.944
PK24122.1 Cannabis sativa PK24122.1 I 0.943
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.941
mgf021983m Mimulus guttatus mgf021983m I 0.941
MDP0000156139 Malus domestica MDP0000156139 I 0.941
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.941
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.940
TCM_035571 Theobroma cacao TCM_035571 I 0.940
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.939
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.938
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.938
MDP0000451107 Malus domestica MDP0000451107 I 0.936
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.935
30206.m000769 Ricinus communis 30206.m000769 I 0.935
Cla001992 Citrullus lanatus Cla001992 I 0.935
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.935
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.935
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.934
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.934
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.934
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.934
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.934
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.933
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.932
mgf018892m Mimulus guttatus mgf018892m N 0.932
Pm022572 Prunus mume Pm022572 I 0.931
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.931
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.931
Cla007910 Citrullus lanatus Cla007910 I 0.931
Bo6g120870 Brassica oleracea Bo6g120870 I 0.930
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.930
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.930
Bo6g083690 Brassica oleracea Bo6g083690 I 0.930
Bra003703 Brassica rapa Bra003703 I 0.930
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.930
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.930
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.930
Bra015716 Brassica rapa Bra015716 I 0.930
Ca_25135 Cicer arietinum Ca_25135 I 0.929
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.929
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.928
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.927
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.927
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.927
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.927
Bra003702 Brassica rapa Bra003702 I 0.927
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.926
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.926
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.926
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.925
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.924
Ca_04385 Cicer arietinum Ca_04385 I 0.922
PK26613.1 Cannabis sativa PK26613.1 I 0.922
Bra008285 Brassica rapa Bra008285 I 0.922
TCM_001348 Theobroma cacao TCM_001348 I 0.921
Pm022570 Prunus mume Pm022570 I 0.916
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.916
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.915
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.915
F775_26337 Aegilops tauschii F775_26337 I 0.915
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.915
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.914
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.914
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.912
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.912
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.912
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.911
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.911
OB04G27270 Oryza brachyantha OB04G27270 I 0.908
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.908
MDP0000701272 Malus domestica MDP0000701272 I 0.907
mgf004276m Mimulus guttatus mgf004276m I 0.907
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.907
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.907
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.906
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.904
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.904
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.904
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.904
OBART04G20290 Oryza barthii OBART04G20290 I 0.904
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.904
Bo2g091240 Brassica oleracea Bo2g091240 I 0.904
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.904
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.903
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.903
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.903
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.903
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.903
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.903
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.903
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.902
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.902
OBART02G25970 Oryza barthii OBART02G25970 I 0.902
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.901
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.900
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.899
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.899
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.899
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.899
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.899
Si012121m.g Setaria italica Si012121m.g I 0.899
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.899
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.898
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.898
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.897
OB02G33250 Oryza brachyantha OB02G33250 I 0.897
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.897
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.897
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.896
Cla005046 Citrullus lanatus Cla005046 I 0.896
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.895
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.894
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.894
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.894
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.894
Pm024289 Prunus mume Pm024289 I 0.894
Si034382m.g Setaria italica Si034382m.g I 0.894
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.894
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.894
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.894
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.892
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.892
MDP0000451038 Malus domestica MDP0000451038 I 0.892
mgf015314m Mimulus guttatus mgf015314m N 0.891
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.890
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.890
Bra036731 Brassica rapa Bra036731 I 0.889
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.889
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.889
Bo8g027460 Brassica oleracea Bo8g027460 I 0.889
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.889
TCM_015563 Theobroma cacao TCM_015563 I 0.888
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.888
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.888
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.888
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.887
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.887
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.886
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.885
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.883
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.883
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.883
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.883
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.883
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.882
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.882
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.880
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.880
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.879
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.879
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.878
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.877
30068.m002635 Ricinus communis 30068.m002635 I 0.877
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.877
Bra040010 Brassica rapa Bra040010 I 0.876
Bo6g049430 Brassica oleracea Bo6g049430 I 0.876
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.873
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.873
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.871
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.871
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.869
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.869
Si016578m.g Setaria italica Si016578m.g I 0.866
F775_24861 Aegilops tauschii F775_24861 N 0.866
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.866
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.864
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.863
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.859
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.852
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.852
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.844
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.832
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.832
Pm001889 Prunus mume Pm001889 I 0.830
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.829
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.827
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.825
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.816
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.816
AT1G76880 Arabidopsis thaliana AT1G76880 D 0.815
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.812