HPBE_0002264401 (Heligmosomoides bakeri)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 HPBE_0002264401 T234424_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.763 0.467
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.763 0.467
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.763 0.467
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.701 0.378
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.701 0.378
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.701 0.378
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.701 0.378
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.701 0.378
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.701 0.378
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.701 0.378
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.701 0.378
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.701 0.378
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HPBE_0002264401-mRNA-1 Homeodomain 30 74

Links

Other Homeodomain family TFs
Other Heligmosomoides bakeri TFs

1234 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29576.m000223 Ricinus communis 29576.m000223 I
30068.m002635 Ricinus communis 30068.m002635 I
30206.m000769 Ricinus communis 30206.m000769 I
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I
BGIOSGA005934 Oryza indica BGIOSGA005934 I
BGIOSGA014631 Oryza indica BGIOSGA014631 I
BGIOSGA031553 Oryza indica BGIOSGA031553 I
Bo2g091240 Brassica oleracea Bo2g091240 I
Bo6g049430 Brassica oleracea Bo6g049430 I
Bo6g083690 Brassica oleracea Bo6g083690 I
Bo6g120870 Brassica oleracea Bo6g120870 I
Bo8g027460 Brassica oleracea Bo8g027460 I
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I
Bra003702 Brassica rapa Bra003702 I
Bra003703 Brassica rapa Bra003703 I
Bra008285 Brassica rapa Bra008285 I
Bra015716 Brassica rapa Bra015716 I
Bra036731 Brassica rapa Bra036731 I
Bra040010 Brassica rapa Bra040010 I
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I
Carubv10019974m.g Capsella rubella Carubv10019974m.g I
Carubv10020016m.g Capsella rubella Carubv10020016m.g I
cassava16715.m1 Manihot esculenta cassava16715.m1 I
cassava16854.m1 Manihot esculenta cassava16854.m1 I
cassava21480.m1 Manihot esculenta cassava21480.m1 I
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I
Ca_04385 Cicer arietinum Ca_04385 I
Ca_04386 Cicer arietinum Ca_04386 I
Ca_25135 Cicer arietinum Ca_25135 I
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I
Cla001992 Citrullus lanatus Cla001992 I
Cla005046 Citrullus lanatus Cla005046 I
Cla007910 Citrullus lanatus Cla007910 I
Cucsa.204000 Cucumis sativus Cucsa.204000 I
Cucsa.250070 Cucumis sativus Cucsa.250070 I
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N
GLYMA02G09060 Glycine max GLYMA02G09060 I
GLYMA06G15500 Glycine max GLYMA06G15500 N
GLYMA09G19750 Glycine max GLYMA09G19750 N
GLYMA10G36950 Glycine max GLYMA10G36950 I
GLYMA10G36960 Glycine max GLYMA10G36960 I
GLYMA16G28250 Glycine max GLYMA16G28250 I
GLYMA20G30640 Glycine max GLYMA20G30640 I
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I
GRMZM2G016649 Zea mays GRMZM2G016649 I
GRMZM2G063203 Zea mays GRMZM2G063203 I
GRMZM2G169580 Zea mays GRMZM2G169580 I
GRMZM2G414159 Zea mays GRMZM2G414159 I
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I
Lus10018888.g Linum usitatissimum Lus10018888.g I
Lus10033504.g Linum usitatissimum Lus10033504.g N
MDP0000156139 Malus domestica MDP0000156139 I
MDP0000451038 Malus domestica MDP0000451038 I
MDP0000451107 Malus domestica MDP0000451107 I
mgf015314m Mimulus guttatus mgf015314m N
mgf018892m Mimulus guttatus mgf018892m N
mgf021983m Mimulus guttatus mgf021983m I
MTR_1g098870 Medicago truncatula MTR_1g098870 I
MTR_1g098900 Medicago truncatula MTR_1g098900 I
MTR_6g035370 Medicago truncatula MTR_6g035370 I
OB02G33250 Oryza brachyantha OB02G33250 I
OB04G27270 Oryza brachyantha OB04G27270 I
OBART04G20290 Oryza barthii OBART04G20290 I
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I
OLONG_017894 Oryza longistaminata OLONG_017894 I
OMERI10G12340 Oryza meridionalis OMERI10G12340 I
ONIVA04G18520 Oryza nivara ONIVA04G18520 I
ONIVA05G15440 Oryza nivara ONIVA05G15440 I
ONIVA10G17310 Oryza nivara ONIVA10G17310 I
OPUNC02G23730 Oryza punctata OPUNC02G23730 I
OPUNC04G17930 Oryza punctata OPUNC04G17930 I
OPUNC10G14260 Oryza punctata OPUNC10G14260 I
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I
PK24122.1 Cannabis sativa PK24122.1 I
PK26613.1 Cannabis sativa PK26613.1 I
Pm001889 Prunus mume Pm001889 I
Pm022570 Prunus mume Pm022570 I
Pm022572 Prunus mume Pm022572 I
Pm024289 Prunus mume Pm024289 I
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I
Sb01g017120 Sorghum bicolor Sb01g017120 I
Sb04g033390 Sorghum bicolor Sb04g033390 I
Sb06g023980 Sorghum bicolor Sb06g023980 I
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I
Si012121m.g Setaria italica Si012121m.g I
Si016578m.g Setaria italica Si016578m.g I
Si034382m.g Setaria italica Si034382m.g I
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I
TCM_001348 Theobroma cacao TCM_001348 I
TCM_015563 Theobroma cacao TCM_015563 I
TCM_035565 Theobroma cacao TCM_035565 I
TCM_035571 Theobroma cacao TCM_035571 I
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I
TRIUR3_33328 Triticum urartu TRIUR3_33328 I
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I