Pavir.Ca01337 (Panicum virgatum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Pavir.Ca01337 T344993_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.947 0.638
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.943 0.606
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.941 0.606
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.915 0.511
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.894 0.585
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.894 0.585
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.893 0.532
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.893 0.532
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.889 0.511
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.889 0.500
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.885 0.532
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.885 0.532
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.885 0.532
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.879 0.500
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.876 0.500
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.853 0.500
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca01337.1.p TCP 60 173
Pavir.Ca01337.2.p TCP 60 173
Pavir.Ca01337.3.p TCP 56 169
Pavir.Ca01337.4.p TCP 56 169

Links

Other TCP family TFs
Other Panicum virgatum TFs

427 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG23380 Caenorhabditis briggsae CBG23380 D
nhr-1 Caenorhabditis elegans WBGene00003600 D
nhr-49 Caenorhabditis elegans WBGene00003639 D
nhr-154 Caenorhabditis elegans WBGene00007547 D
WUBG_08038 Wuchereria bancrofti WUBG_08038 I
Bm4980 Brugia malayi Bm4980 I
Bm5319 Brugia malayi Bm5319 I
Bm5520 Brugia malayi Bm5520 I
CBG00093 Caenorhabditis briggsae CBG00093 I
CBG01866 Caenorhabditis briggsae CBG01866 I
CBG02077 Caenorhabditis briggsae CBG02077 I
CBG03844 Caenorhabditis briggsae CBG03844 I
CBG09380 Caenorhabditis briggsae CBG09380 I
CBG10855 Caenorhabditis briggsae CBG10855 I
CBG10857 Caenorhabditis briggsae CBG10857 I
CBG14485 Caenorhabditis briggsae CBG14485 I
CBG16594 Caenorhabditis briggsae CBG16594 I
CBG23318 Caenorhabditis briggsae CBG23318 I
CBG23319 Caenorhabditis briggsae CBG23319 I
CBG23381 Caenorhabditis briggsae CBG23381 I
CBN07240 Caenorhabditis brenneri CBN07240 I
CBN11572 Caenorhabditis brenneri CBN11572 I
CBN15481 Caenorhabditis brenneri CBN15481 I
CBN18198 Caenorhabditis brenneri CBN18198 I
CBN19235 Caenorhabditis brenneri CBN19235 I
CBN20518 Caenorhabditis brenneri CBN20518 I
CBN20749 Caenorhabditis brenneri CBN20749 I
CBN21115 Caenorhabditis brenneri CBN21115 I
CBN24827 Caenorhabditis brenneri CBN24827 I
CBN28497 Caenorhabditis brenneri CBN28497 I
CBN28528 Caenorhabditis brenneri CBN28528 I
CBN28791 Caenorhabditis brenneri CBN28791 I
CBN29725 Caenorhabditis brenneri CBN29725 I
CBN30215 Caenorhabditis brenneri CBN30215 I
CJA00680 Caenorhabditis japonica CJA00680 I
CJA06153 Caenorhabditis japonica CJA06153 I
CJA08896 Caenorhabditis japonica CJA08896 I
CJA13458 Caenorhabditis japonica CJA13458 I
CJA16040 Caenorhabditis japonica CJA16040 I
CJA37776 Caenorhabditis japonica CJA37776 I
CJA41479 Caenorhabditis japonica CJA41479 I
CRE00149 Caenorhabditis remanei CRE00149 I
CRE00606 Caenorhabditis remanei CRE00606 I
CRE00809 Caenorhabditis remanei CRE00809 I
CRE03310 Caenorhabditis remanei CRE03310 I
CRE07549 Caenorhabditis remanei CRE07549 I
CRE08259 Caenorhabditis remanei CRE08259 I
CRE24074 Caenorhabditis remanei CRE24074 I
CRE25378 Caenorhabditis remanei CRE25378 I
CRE26981 Caenorhabditis remanei CRE26981 I
CRE26982 Caenorhabditis remanei CRE26982 I
CRE27050 Caenorhabditis remanei CRE27050 I
CRE27052 Caenorhabditis remanei CRE27052 I
CRE27053 Caenorhabditis remanei CRE27053 I
CRE30787 Caenorhabditis remanei CRE30787 I
LOAG_00300 Loa loa LOAG_00300 I
LOAG_03407 Loa loa LOAG_03407 I
LOAG_08615 Loa loa LOAG_08615 I
LOAG_16377 Loa loa LOAG_16377 I
Ppa-nhr-120 Pristionchus pacificus PPA00183 I
PPA06637 Pristionchus pacificus PPA06637 I
PPA16374 Pristionchus pacificus PPA16374 I
PPA20196 Pristionchus pacificus PPA20196 I
PPA21777 Pristionchus pacificus PPA21777 I
PPA24468 Pristionchus pacificus PPA24468 I
PPA24481 Pristionchus pacificus PPA24481 I
PPA29597 Pristionchus pacificus PPA29597 I
nhr-10 Caenorhabditis elegans WBGene00003609 I
nhr-17 Caenorhabditis elegans WBGene00003616 I
nhr-35 Caenorhabditis elegans WBGene00003628 I
nhr-47 Caenorhabditis elegans WBGene00003637 I
nhr-68 Caenorhabditis elegans WBGene00003658 I
nhr-101 Caenorhabditis elegans WBGene00003691 I
nhr-120 Caenorhabditis elegans WBGene00003710 I
nhr-136 Caenorhabditis elegans WBGene00003726 I
nhr-153 Caenorhabditis elegans WBGene00007546 I
nhr-173 Caenorhabditis elegans WBGene00016975 I
WBGene00236987 Onchocerca volvulus WBGene00236987 I
WBGene00240403 Onchocerca volvulus WBGene00240403 I
WBGene00240723 Onchocerca volvulus WBGene00240723 I
WBGene00241993 Onchocerca volvulus WBGene00241993 I
Minc13747 Meloidogyne incognita Minc13747 I
Minc17538 Meloidogyne incognita Minc17538 I
ACAC_0000711701 Angiostrongylus cantonensis ACAC_0000711701 I
ACAC_0001297301 Angiostrongylus cantonensis ACAC_0001297301 I
ACOC_0000048701 Angiostrongylus costaricensis ACOC_0000048701 I
ACOC_0000700901 Angiostrongylus costaricensis ACOC_0000700901 I
ACOC_0000869501 Angiostrongylus costaricensis ACOC_0000869501 I
ALUE_0002179401 Ascaris lumbricoides ALUE_0002179401 I
ANCCAN_09880 Ancylostoma caninum ANCCAN_09880 I
ANCCAN_14103 Ancylostoma caninum ANCCAN_14103 I
ANCCAN_17081 Ancylostoma caninum ANCCAN_17081 I
ANCCAN_24419 Ancylostoma caninum ANCCAN_24419 I
ANCCEY_01254 Ancylostoma ceylanicum ANCCEY_01254 I
ANCCEY_01961 Ancylostoma ceylanicum ANCCEY_01961 I
ASIM_0001308601 Anisakis simplex ASIM_0001308601 I
ASIM_0001569801 Anisakis simplex ASIM_0001569801 I
ASU_02770 Ascaris suum ASU_02770 I
ASU_03657 Ascaris suum ASU_03657 I
ASU_03870 Ascaris suum ASU_03870 I
ASU_10584 Ascaris suum ASU_10584 I
ASU_12501 Ascaris suum ASU_12501 I
ASU_13587 Ascaris suum ASU_13587 I
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0 I
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0 I
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0 I
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0 I
BTMF_0000217201 Brugia timori BTMF_0000217201 I
BTMF_0001127801 Brugia timori BTMF_0001127801 I
BTMF_0001388101 Brugia timori BTMF_0001388101 I
BXY_0360200 Bursaphelenchus xylophilus BXY_0360200 I
BXY_0599800 Bursaphelenchus xylophilus BXY_0599800 I
BXY_0631600 Bursaphelenchus xylophilus BXY_0631600 I
BXY_0988800 Bursaphelenchus xylophilus BXY_0988800 I
BXY_1057600 Bursaphelenchus xylophilus BXY_1057600 I
BXY_1375200 Bursaphelenchus xylophilus BXY_1375200 I
DICVIV_00957 Dictyocaulus viviparus DICVIV_00957 I
DICVIV_03784 Dictyocaulus viviparus DICVIV_03784 I
DICVIV_09815 Dictyocaulus viviparus DICVIV_09815 I
DICVIV_12420 Dictyocaulus viviparus DICVIV_12420 I
DME_0000591901 Dracunculus medinensis DME_0000591901 I
DME_0000693601 Dracunculus medinensis DME_0000693601 I
DME_0000747901 Dracunculus medinensis DME_0000747901 I
DME_0001010101 Dracunculus medinensis DME_0001010101 I
EEL_0000987201 Elaeophora elaphi EEL_0000987201 I
EEL_0000989101 Elaeophora elaphi EEL_0000989101 I
EVEC_0000027301 Enterobius vermicularis EVEC_0000027301 I
EVEC_0000477801 Enterobius vermicularis EVEC_0000477801 I
EVEC_0001313601 Enterobius vermicularis EVEC_0001313601 I
GPLIN_000284100 Globodera pallida GPLIN_000284100 I
GPLIN_000337500 Globodera pallida GPLIN_000337500 I
GPLIN_001175700 Globodera pallida GPLIN_001175700 I
Hba_12763 Heterorhabditis bacteriophora Hba_12763 I
HCOI00592600 Haemonchus contortus HCOI00592600 I
HCOI00601000 Haemonchus contortus HCOI00601000 I
HCOI00618700 Haemonchus contortus HCOI00618700 I
HCOI00673400 Haemonchus contortus HCOI00673400 I
HCOI01292200 Haemonchus contortus HCOI01292200 I
HCOI01525900 Haemonchus contortus HCOI01525900 I
HCOI01554200 Haemonchus contortus HCOI01554200 I
HCOI01687000 Haemonchus contortus HCOI01687000 I
HPBE_0000704501 Heligmosomoides bakeri HPBE_0000704501 I
HPBE_0000837301 Heligmosomoides bakeri HPBE_0000837301 I
HPBE_0001154501 Heligmosomoides bakeri HPBE_0001154501 I
HPBE_0001246601 Heligmosomoides bakeri HPBE_0001246601 I
HPLM_0000564201 Haemonchus placei HPLM_0000564201 I
HPLM_0000769401 Haemonchus placei HPLM_0000769401 I
L596_g11035 Steinernema carpocapsae L596_g11035 I
L596_g12276 Steinernema carpocapsae L596_g12276 I
L596_g12321 Steinernema carpocapsae L596_g12321 I
L596_g14199 Steinernema carpocapsae L596_g14199 I
L596_g19151 Steinernema carpocapsae L596_g19151 I
L596_g23123 Steinernema carpocapsae L596_g23123 I
L596_g23777 Steinernema carpocapsae L596_g23777 I
L596_g23863 Steinernema carpocapsae L596_g23863 I
L596_g27472 Steinernema carpocapsae L596_g27472 I
L596_g702 Steinernema carpocapsae L596_g702 I
L889_g11570 Steinernema feltiae L889_g11570 I
L889_g1557 Steinernema feltiae L889_g1557 I
L889_g17247 Steinernema feltiae L889_g17247 I
L889_g1891 Steinernema feltiae L889_g1891 I
L889_g22901 Steinernema feltiae L889_g22901 I
L889_g29879 Steinernema feltiae L889_g29879 I
L889_g7780 Steinernema feltiae L889_g7780 I
L892_g17612 Steinernema scapterisci L892_g17612 I
L892_g2422 Steinernema scapterisci L892_g2422 I
L892_g4134 Steinernema scapterisci L892_g4134 I
L892_g4169 Steinernema scapterisci L892_g4169 I
L892_g5067 Steinernema scapterisci L892_g5067 I
L892_g5079 Steinernema scapterisci L892_g5079 I
L892_g8671 Steinernema scapterisci L892_g8671 I
L893_g13285 Steinernema glaseri L893_g13285 I
L893_g15276 Steinernema glaseri L893_g15276 I
L893_g21283 Steinernema glaseri L893_g21283 I
L893_g22683 Steinernema glaseri L893_g22683 I
L893_g25227 Steinernema glaseri L893_g25227 I
L893_g28857 Steinernema glaseri L893_g28857 I
L893_g3010 Steinernema glaseri L893_g3010 I
L893_g3565 Steinernema glaseri L893_g3565 I
L898_g22454 Steinernema monticolum L898_g22454 I
L898_g23058 Steinernema monticolum L898_g23058 I
L898_g26357 Steinernema monticolum L898_g26357 I
L898_g2764 Steinernema monticolum L898_g2764 I
L898_g8573 Steinernema monticolum L898_g8573 I
L898_g9866 Steinernema monticolum L898_g9866 I
MhA1_Contig2491.frz3.gene4 Meloidogyne hapla MhA1_Contig2491.frz3.gene4 I
MhA1_Contig320.frz3.gene45 Meloidogyne hapla MhA1_Contig320.frz3.gene45 I
MhA1_Contig817.frz3.gene1 Meloidogyne hapla MhA1_Contig817.frz3.gene1 I
nAv.1.0.1.g02923 Acanthocheilonema viteae nAv.1.0.1.g02923 I
NBR_0001576001 Nippostrongylus brasiliensis NBR_0001576001 I
nDi.2.2.2.g02318 Dirofilaria immitis nDi.2.2.2.g02318 I
NECAME_00872 Necator americanus NECAME_00872 I
NECAME_01944 Necator americanus NECAME_01944 I
NECAME_08394 Necator americanus NECAME_08394 I
nLs.2.1.2.g04051 Litomosoides sigmodontis nLs.2.1.2.g04051 I
nOo.2.0.1.g01530 Onchocerca ochengi nOo.2.0.1.g01530 I
nOo.2.0.1.g02345 Onchocerca ochengi nOo.2.0.1.g02345 I
nOo.2.0.1.g03355 Onchocerca ochengi nOo.2.0.1.g03355 I
OESDEN_04341 Oesophagostomum dentatum OESDEN_04341 I
OFLC_0001450101 Onchocerca flexuosa OFLC_0001450101 I
PEQ_0000391501 Parascaris equorum PEQ_0000391501 I
PEQ_0000722401 Parascaris equorum PEQ_0000722401 I
PTRK_0000194200 Parastrongyloides trichosuri PTRK_0000194200 I
PTRK_0000480700 Parastrongyloides trichosuri PTRK_0000480700 I
PTRK_0000720500 Parastrongyloides trichosuri PTRK_0000720500 I
PTRK_0000994100 Parastrongyloides trichosuri PTRK_0000994100 I
PTRK_0001020800 Parastrongyloides trichosuri PTRK_0001020800 I
PTRK_0001163100 Parastrongyloides trichosuri PTRK_0001163100 I
PTRK_0001312000 Parastrongyloides trichosuri PTRK_0001312000 I
RSKR_0000342500 Rhabditophanes kr3021 RSKR_0000342500 I
RSKR_0001171300 Rhabditophanes kr3021 RSKR_0001171300 I
scaffold251-EXSNAP2012.44 Pristionchus exspectatus scaffold251-EXSNAP2012.44 I
scaffold265-EXSNAP2012.2 Pristionchus exspectatus scaffold265-EXSNAP2012.2 I
scaffold290-EXSNAP2012.30 Pristionchus exspectatus scaffold290-EXSNAP2012.30 I
scaffold314-EXSNAP2012.19 Pristionchus exspectatus scaffold314-EXSNAP2012.19 I
scaffold384-EXSNAP2012.4 Pristionchus exspectatus scaffold384-EXSNAP2012.4 I
scaffold426-EXSNAP2012.35 Pristionchus exspectatus scaffold426-EXSNAP2012.35 I
scaffold43-EXSNAP2012.41 Pristionchus exspectatus scaffold43-EXSNAP2012.41 I
scaffold488-EXSNAP2012.17 Pristionchus exspectatus scaffold488-EXSNAP2012.17 I
scaffold552-EXSNAP2012.17 Pristionchus exspectatus scaffold552-EXSNAP2012.17 I
scaffold552-EXSNAP2012.18 Pristionchus exspectatus scaffold552-EXSNAP2012.18 I
scaffold572-EXSNAP2012.7 Pristionchus exspectatus scaffold572-EXSNAP2012.7 I
scaffold598-EXSNAP2012.5 Pristionchus exspectatus scaffold598-EXSNAP2012.5 I
scaffold605-EXSNAP2012.9 Pristionchus exspectatus scaffold605-EXSNAP2012.9 I
scaffold826-EXSNAP2012.10 Pristionchus exspectatus scaffold826-EXSNAP2012.10 I
SMUV_0000475001 Syphacia muris SMUV_0000475001 I
SMUV_0000657401 Syphacia muris SMUV_0000657401 I
SMUV_0000708401 Syphacia muris SMUV_0000708401 I
SMUV_0000795201 Syphacia muris SMUV_0000795201 I
SMUV_0001072301 Syphacia muris SMUV_0001072301 I
SPAL_0000231300 Strongyloides papillosus SPAL_0000231300 I
SPAL_0000490500 Strongyloides papillosus SPAL_0000490500 I
SPAL_0000841700 Strongyloides papillosus SPAL_0000841700 I
SPAL_0001084400 Strongyloides papillosus SPAL_0001084400 I
SPAL_0001084500 Strongyloides papillosus SPAL_0001084500 I
SPAL_0001099500 Strongyloides papillosus SPAL_0001099500 I
SPAL_0001637600 Strongyloides papillosus SPAL_0001637600 I
SPAL_0001712900 Strongyloides papillosus SPAL_0001712900 I
SSTP_0000055100 Strongyloides stercoralis SSTP_0000055100 I
SSTP_0000145700 Strongyloides stercoralis SSTP_0000145700 I
SSTP_0000408200 Strongyloides stercoralis SSTP_0000408200 I
SSTP_0000546600 Strongyloides stercoralis SSTP_0000546600 I
SSTP_0000769100 Strongyloides stercoralis SSTP_0000769100 I
SSTP_0001035300 Strongyloides stercoralis SSTP_0001035300 I
SSTP_0001081300 Strongyloides stercoralis SSTP_0001081300 I
SSTP_0001253400 Strongyloides stercoralis SSTP_0001253400 I
SVE_0146100 Strongyloides venezuelensis SVE_0146100 I
SVE_0429000 Strongyloides venezuelensis SVE_0429000 I
SVE_0858700 Strongyloides venezuelensis SVE_0858700 I
SVE_0956400 Strongyloides venezuelensis SVE_0956400 I
SVE_1749000 Strongyloides venezuelensis SVE_1749000 I
SVE_1799100 Strongyloides venezuelensis SVE_1799100 I
SVE_1951500 Strongyloides venezuelensis SVE_1951500 I
TCLT_0000256201 Thelazia callipaeda TCLT_0000256201 I
TCLT_0000399401 Thelazia callipaeda TCLT_0000399401 I
TCLT_0000461101 Thelazia callipaeda TCLT_0000461101 I
TCLT_0000612301 Thelazia callipaeda TCLT_0000612301 I
TELCIR_00491 Teladorsagia circumcincta TELCIR_00491 I
PPA10975 Pristionchus pacificus PPA10975 N
PPA27013 Pristionchus pacificus PPA27013 N
ASIM_0001238601 Anisakis simplex ASIM_0001238601 N
L889_g22425 Steinernema feltiae L889_g22425 N
nLs.2.1.2.g09268 Litomosoides sigmodontis nLs.2.1.2.g09268 N
scaffold92-EXSNAP2012.31 Pristionchus exspectatus scaffold92-EXSNAP2012.31 N
TCNE_0001076801 Toxocara canis TCNE_0001076801 N