Pavir.Ab02685 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ab02685 T009352_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.857 0.980
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.857 0.980
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.808 0.960
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.750 0.840
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.750 0.840
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.750 0.840
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.750 0.840
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.715 0.780
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.715 0.780
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.715 0.780
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.714 0.820
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.714 0.820
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.686 0.740
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.686 0.740
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.686 0.740
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.686 0.740
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.686 0.740
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.686 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab02685.1.p AP2 78 129

Links

Other AP2 family TFs
Other Panicum virgatum TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.708
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.702
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.700
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.686
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.744
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.714
DREB1F Arabidopsis thaliana AT1G12610 D 0.686
DREB1C Arabidopsis thaliana AT4G25470 D 0.715
DREB1A Arabidopsis thaliana AT4G25480 D 0.750
DREB1D Arabidopsis thaliana AT5G51990 D 0.714
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.714
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.746
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.736
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.746
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.842
Bo01335s010 Brassica oleracea Bo01335s010 I 0.699
Bo8g108050 Brassica oleracea Bo8g108050 I 0.684
Bo9g104770 Brassica oleracea Bo9g104770 I 0.714
Bra016763 Brassica rapa Bra016763 I 0.699
Bra026963 Brassica rapa Bra026963 I 0.684
Bra028290 Brassica rapa Bra028290 I 0.714
PK23332.1 Cannabis sativa PK23332.1 I 0.737
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.714
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.679
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.739
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.746
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.746
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.687
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.679
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.714
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.720
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.724
Cla002362 Citrullus lanatus Cla002362 I 0.705
Cla006315 Citrullus lanatus Cla006315 I 0.732
Cla011674 Citrullus lanatus Cla011674 I 0.712
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.679
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.679
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.679
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.684
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.734
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.688
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.686
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.735
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.735
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.689
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.714
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.736
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.737
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.720
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.723
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.686
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.686
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.679
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.720
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.746
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.706
Gorai.008G280600 Gossypium raimondii Gorai.008G280600 I 0.692
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.842
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.857
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.808
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.681
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.681
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.681
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.681
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.681
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.682
MDP0000154764 Malus domestica MDP0000154764 I 0.711
MDP0000198054 Malus domestica MDP0000198054 I 0.709
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.677
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.717
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.746
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.722
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.692
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.692
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.679
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.688
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.688
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.688
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.684
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.684
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.712
mgf017136m Mimulus guttatus mgf017136m I 0.703
mgf019061m Mimulus guttatus mgf019061m I 0.711
mgf026339m Mimulus guttatus mgf026339m I 0.682
mgf026642m Mimulus guttatus mgf026642m I 0.744
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.726
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.730
OBART02G27760 Oryza barthii OBART02G27760 I 0.857
OBART04G22220 Oryza barthii OBART04G22220 I 0.808
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.808
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.857
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.808
DREB1G Oryza indica BGIOSGA008804 I 0.857
DREB1E Oryza indica BGIOSGA016950 I 0.808
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.857
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.808
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.857
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.808
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.857
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.808
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.857
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.808
DREB1G Oryza sativa OS02G0677300 D 0.857
DREB1E Oryza sativa OS04G0572400 D 0.808
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.857
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.786
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.701
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.683
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.686
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.714
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.746
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.740
Pm023769 Prunus mume Pm023769 I 0.708
Pm023772 Prunus mume Pm023772 I 0.706
Pm023775 Prunus mume Pm023775 I 0.708
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.708
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.714
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.724
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.708
30147.m014313 Ricinus communis 30147.m014313 I 0.746
30190.m011119 Ricinus communis 30190.m011119 I 0.680
30190.m011120 Ricinus communis 30190.m011120 I 0.685
60638.m00016 Ricinus communis 60638.m00016 I 0.699
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.680
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.734
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.714
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.683
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.680
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.724
Si011005m.g Setaria italica Si011005m.g I 0.797
Si018262m.g Setaria italica Si018262m.g I 0.847
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.715
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.714
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.710
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.702
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.699
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.699
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.697
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.694
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.694
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.857
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.797
TCM_016175 Theobroma cacao TCM_016175 I 0.709
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.713
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.697
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.710
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.797
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.857