CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
VIT_18s0001g05890
(
Vitis vinifera
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
VIT_18s0001g05890
T006136_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF021
M06593_2.00
Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND
Dap-seq
OMalley et al.(2016)
AT1G71450_col_a
0.736
0.860
ERF021
M06594_2.00
Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN
Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a
0.736
0.860
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VIT_18s0001g05890.t01
AP2
17
68
SGYRGVRKRRWGKWVSEIREPGTKTRIWLGSFETPEMAAMAYDAAALHFRGH
Links
Other
AP2
family TFs
Other
Vitis vinifera
TFs
74 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Eucgr.F02974
Eucalyptus grandis
Eucgr.F02974
I
0.778
GLYMA11G01640
Glycine max
GLYMA11G01640
I
0.760
MTR_5g008590
Medicago truncatula
MTR_5g008590
I
0.760
PRUPE_ppa012354mg
Prunus persica
PRUPE_ppa012354mg
I
0.760
GLYMA01G44140
Glycine max
GLYMA01G44140
I
0.760
Pm004269
Prunus mume
Pm004269
I
0.760
chr2.CM0018.470.nd
Lotus japonicus
chr2.CM0018.470.nd
I
0.760
orange1.1g035756m.g
Citrus sinensis
orange1.1g035756m.g
I
0.751
Ciclev10023857m.g
Citrus clementina
Ciclev10023857m.g
I
0.751
MDP0000283350
Malus domestica
MDP0000283350
I
0.750
Gorai.009G266600
Gossypium raimondii
Gorai.009G266600
I
0.745
POPTR_0019s10420
Populus trichocarpa
POPTR_0019s10420
I
0.743
POPTR_0013s10340
Populus trichocarpa
POPTR_0013s10340
I
0.739
evm.TU.supercontig_21.69
Carica papaya
evm.TU.supercontig_21.69
I
0.737
ERF021
Arabidopsis thaliana
AT1G71450
D
0.736
Bo2g072910
Brassica oleracea
Bo2g072910
I
0.736
SapurV1A.1331s0040
Salix purpurea
SapurV1A.1331s0040
I
0.736
SapurV1A.1130s0100
Salix purpurea
SapurV1A.1130s0100
I
0.736
Cagra.2418s0001
Capsella grandiflora
Cagra.2418s0001
I
0.736
Carubv10022349m.g
Capsella rubella
Carubv10022349m.g
I
0.736
Bra007975
Brassica rapa
Bra007975
I
0.736
fgenesh2_kg.2__1406__AT1G71450.1
Arabidopsis lyrata
fgenesh2_kg.2__1406__AT1G71450.1
I
0.736
gene27021-v1.0-hybrid
Fragaria vesca
gene27021-v1.0-hybrid
I
0.735
cassava43172.valid.m1
Manihot esculenta
cassava43172.valid.m1
I
0.735
cassava8552.m1
Manihot esculenta
cassava8552.m1
I
0.734
Thhalv10019659m.g
Eutrema salsugineum
Thhalv10019659m.g
I
0.733
Lus10006173.g
Linum usitatissimum
Lus10006173.g
I
0.732
Solyc11g042580.1
Solanum lycopersicum
Solyc11g042580.1
I
0.730
SapurV1A.0551s0030
Salix purpurea
SapurV1A.0551s0030
I
0.729
Cucsa.237150
Cucumis sativus
Cucsa.237150
I
0.728
Cla012665
Citrullus lanatus
Cla012665
I
0.728
Bra016136
Brassica rapa
Bra016136
I
0.727
Lus10041050.g
Linum usitatissimum
Lus10041050.g
I
0.726
POPTR_0001s18180
Populus trichocarpa
POPTR_0001s18180
I
0.726
Bo6g113020
Brassica oleracea
Bo6g113020
I
0.725
Carubv10012215m.g
Capsella rubella
Carubv10012215m.g
I
0.723
Gorai.005G116500
Gossypium raimondii
Gorai.005G116500
I
0.722
Eucgr.F02975
Eucalyptus grandis
Eucgr.F02975
I
0.722
28118.m000034
Ricinus communis
28118.m000034
I
0.720
TCM_036269
Theobroma cacao
TCM_036269
I
0.719
evm.TU.supercontig_21.70
Carica papaya
evm.TU.supercontig_21.70
I
0.716
PGSC0003DMG400017813
Solanum tuberosum
PGSC0003DMG400017813
I
0.716
Gorai.009G266700
Gossypium raimondii
Gorai.009G266700
I
0.714
TCM_036270
Theobroma cacao
TCM_036270
I
0.714
VIT_18s0001g05850
Vitis vinifera
VIT_18s0001g05850
I
0.712
Lus10003513.g
Linum usitatissimum
Lus10003513.g
N
0.709
Bo8g027240
Brassica oleracea
Bo8g027240
I
0.708
Bostr.3359s0006
Boechera stricta
Bostr.3359s0006
I
0.706
Pm004272
Prunus mume
Pm004272
I
0.703
ERF022
Arabidopsis thaliana
AT1G33760
I
0.703
AMTR_s00021p00223240
Amborella trichopoda
AMTR_s00021p00223240
I
0.703
PRUPE_ppa018178mg
Prunus persica
PRUPE_ppa018178mg
I
0.702
Thhalv10010002m.g
Eutrema salsugineum
Thhalv10010002m.g
I
0.702
Bra003924
Brassica rapa
Bra003924
I
0.701
Bo6g094210
Brassica oleracea
Bo6g094210
I
0.701
PGSC0003DMG400018054
Solanum tuberosum
PGSC0003DMG400018054
I
0.700
Ciclev10024063m.g
Citrus clementina
Ciclev10024063m.g
I
0.697
orange1.1g046901m.g
Citrus sinensis
orange1.1g046901m.g
I
0.697
gene27017-v1.0-hybrid
Fragaria vesca
gene27017-v1.0-hybrid
I
0.696
MDP0000151428
Malus domestica
MDP0000151428
I
0.695
27805.m000021
Ricinus communis
27805.m000021
I
0.695
MDP0000122740
Malus domestica
MDP0000122740
I
0.695
MDP0000122739
Malus domestica
MDP0000122739
I
0.695
chr2.CM0018.610.nd
Lotus japonicus
chr2.CM0018.610.nd
I
0.695
Bostr.10273s0203
Boechera stricta
Bostr.10273s0203
I
0.692
VIT_15s0046g00310
Vitis vinifera
VIT_15s0046g00310
I
0.687
Carubv10011715m.g
Capsella rubella
Carubv10011715m.g
I
0.686
Bra010210
Brassica rapa
Bra010210
I
0.686
scaffold_103754.1
Arabidopsis lyrata
scaffold_103754.1
I
0.682
Cla012661
Citrullus lanatus
Cla012661
I
0.681
Cucsa.237170
Cucumis sativus
Cucsa.237170
I
0.681
Bra028009
Brassica rapa
Bra028009
I
0.680
AMTR_s00099p00039760
Amborella trichopoda
AMTR_s00099p00039760
I
0.680
Bo5g086680
Brassica oleracea
Bo5g086680
I
0.680