Bra007975 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra007975 T001033_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.823 0.980
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.823 0.980
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra007975.1-P AP2 21 72

Links

Other AP2 family TFs
Other Brassica rapa TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.823
Bo2g072910 Brassica oleracea Bo2g072910 I 0.823
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.823
ERF021 Arabidopsis thaliana AT1G71450 D 0.823
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.823
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.813
Bra016136 Brassica rapa Bra016136 I 0.810
Bo6g113020 Brassica oleracea Bo6g113020 I 0.803
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.785
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.785
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.785
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.785
Bo6g094210 Brassica oleracea Bo6g094210 I 0.783
Bra003924 Brassica rapa Bra003924 I 0.783
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.779
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.778
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.777
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.777
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.776
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.775
Pm004269 Prunus mume Pm004269 I 0.775
MDP0000283350 Malus domestica MDP0000283350 I 0.772
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.772
Cla012665 Citrullus lanatus Cla012665 I 0.770
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.769
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.767
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.767
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.767
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.762
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.761
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.760
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.758
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.757
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.757
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.756
28118.m000034 Ricinus communis 28118.m000034 I 0.748
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.747
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.746
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.746
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.740
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.739
TCM_036269 Theobroma cacao TCM_036269 I 0.738
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.736
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.736
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.735
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.734
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.730
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.725
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.722
Bo8g027240 Brassica oleracea Bo8g027240 I 0.722
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.722
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.722
TCM_036270 Theobroma cacao TCM_036270 I 0.721
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.719
ERF022 Arabidopsis thaliana AT1G33760 I 0.717
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.717
Pm004272 Prunus mume Pm004272 I 0.716
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.716
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.715
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.714
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.714
Bra010210 Brassica rapa Bra010210 I 0.708
Bra028009 Brassica rapa Bra028009 I 0.707
MDP0000122740 Malus domestica MDP0000122740 I 0.704
MDP0000122739 Malus domestica MDP0000122739 I 0.704
MDP0000151428 Malus domestica MDP0000151428 I 0.704
Bo5g086680 Brassica oleracea Bo5g086680 I 0.702
Bo6g046850 Brassica oleracea Bo6g046850 I 0.701
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.701
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.701
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.698
27805.m000021 Ricinus communis 27805.m000021 I 0.697
Si026882m.g Setaria italica Si026882m.g I 0.689
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.686
Ca_15064 Cicer arietinum Ca_15064 I 0.685
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.682
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.682
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.682
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.682
Cla012661 Citrullus lanatus Cla012661 I 0.682
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.680
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.680
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.680
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.680