CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10012215m.g
(
Capsella rubella
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Carubv10012215m.g
T007872_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF021
M06593_2.00
Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND
Dap-seq
OMalley et al.(2016)
AT1G71450_col_a
0.740
0.800
ERF021
M06594_2.00
Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN
Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a
0.740
0.800
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10012215m
AP2
18
69
VSYRGVRRRKWGKWVSEIREPGTKTRIWLGSYETAEMAAAAYDVAALHLKGH
Links
Other
AP2
family TFs
Other
Capsella rubella
TFs
130 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo8g027240
Brassica oleracea
Bo8g027240
I
0.793
Bostr.3359s0006
Boechera stricta
Bostr.3359s0006
I
0.791
Thhalv10010002m.g
Eutrema salsugineum
Thhalv10010002m.g
I
0.789
ERF022
Arabidopsis thaliana
AT1G33760
I
0.787
Pm004269
Prunus mume
Pm004269
I
0.778
PRUPE_ppa012354mg
Prunus persica
PRUPE_ppa012354mg
I
0.778
Carubv10011715m.g
Capsella rubella
Carubv10011715m.g
I
0.773
evm.TU.supercontig_21.70
Carica papaya
evm.TU.supercontig_21.70
I
0.770
orange1.1g035756m.g
Citrus sinensis
orange1.1g035756m.g
I
0.770
Ciclev10023857m.g
Citrus clementina
Ciclev10023857m.g
I
0.770
MTR_5g008590
Medicago truncatula
MTR_5g008590
I
0.769
chr2.CM0018.470.nd
Lotus japonicus
chr2.CM0018.470.nd
I
0.769
GLYMA11G01640
Glycine max
GLYMA11G01640
I
0.769
GLYMA01G44140
Glycine max
GLYMA01G44140
I
0.769
VIT_18s0001g05850
Vitis vinifera
VIT_18s0001g05850
I
0.768
Bra028009
Brassica rapa
Bra028009
I
0.767
Bra010210
Brassica rapa
Bra010210
I
0.767
TCM_036269
Theobroma cacao
TCM_036269
I
0.767
scaffold_103754.1
Arabidopsis lyrata
scaffold_103754.1
I
0.766
Eucgr.F02974
Eucalyptus grandis
Eucgr.F02974
I
0.765
Gorai.009G266600
Gossypium raimondii
Gorai.009G266600
I
0.763
POPTR_0019s10420
Populus trichocarpa
POPTR_0019s10420
I
0.761
Bo6g046850
Brassica oleracea
Bo6g046850
I
0.761
MDP0000283350
Malus domestica
MDP0000283350
I
0.759
Gorai.009G266700
Gossypium raimondii
Gorai.009G266700
I
0.758
SapurV1A.1331s0050
Salix purpurea
SapurV1A.1331s0050
I
0.757
SapurV1A.1130s0090
Salix purpurea
SapurV1A.1130s0090
I
0.757
evm.TU.supercontig_21.69
Carica papaya
evm.TU.supercontig_21.69
I
0.755
SapurV1A.1331s0040
Salix purpurea
SapurV1A.1331s0040
I
0.754
SapurV1A.1130s0100
Salix purpurea
SapurV1A.1130s0100
I
0.754
POPTR_0013s10340
Populus trichocarpa
POPTR_0013s10340
I
0.752
Bo5g086680
Brassica oleracea
Bo5g086680
I
0.751
PGSC0003DMG400018054
Solanum tuberosum
PGSC0003DMG400018054
I
0.750
TCM_036270
Theobroma cacao
TCM_036270
I
0.749
cassava43172.valid.m1
Manihot esculenta
cassava43172.valid.m1
I
0.748
GLYMA01G44130
Glycine max
GLYMA01G44130
I
0.748
cassava8552.m1
Manihot esculenta
cassava8552.m1
I
0.748
Cla012665
Citrullus lanatus
Cla012665
I
0.747
PGSC0003DMG400017813
Solanum tuberosum
PGSC0003DMG400017813
I
0.746
AMTR_s00099p00039760
Amborella trichopoda
AMTR_s00099p00039760
I
0.745
gene27021-v1.0-hybrid
Fragaria vesca
gene27021-v1.0-hybrid
I
0.744
POPTR_0001s18180
Populus trichocarpa
POPTR_0001s18180
I
0.744
chr2.CM0018.610.nd
Lotus japonicus
chr2.CM0018.610.nd
I
0.742
Cucsa.237150
Cucumis sativus
Cucsa.237150
I
0.742
Eucgr.F02976
Eucalyptus grandis
Eucgr.F02976
I
0.741
Bo2g072910
Brassica oleracea
Bo2g072910
I
0.740
ERF021
Arabidopsis thaliana
AT1G71450
D
0.740
Cagra.2418s0001
Capsella grandiflora
Cagra.2418s0001
I
0.740
Carubv10022349m.g
Capsella rubella
Carubv10022349m.g
I
0.740
fgenesh2_kg.2__1406__AT1G71450.1
Arabidopsis lyrata
fgenesh2_kg.2__1406__AT1G71450.1
I
0.740
Thhalv10019659m.g
Eutrema salsugineum
Thhalv10019659m.g
I
0.737
Gorai.005G116500
Gossypium raimondii
Gorai.005G116500
I
0.737
SapurV1A.0551s0030
Salix purpurea
SapurV1A.0551s0030
I
0.736
Eucgr.F02975
Eucalyptus grandis
Eucgr.F02975
I
0.734
POPTR_0019s10430
Populus trichocarpa
POPTR_0019s10430
I
0.733
SapurV1A.3106s0010
Salix purpurea
SapurV1A.3106s0010
I
0.733
SapurV1A.0551s0040
Salix purpurea
SapurV1A.0551s0040
I
0.733
Pm004272
Prunus mume
Pm004272
I
0.733
POPTR_0013s10330
Populus trichocarpa
POPTR_0013s10330
I
0.733
PRUPE_ppa018178mg
Prunus persica
PRUPE_ppa018178mg
I
0.732
27805.m000021
Ricinus communis
27805.m000021
I
0.731
Ciclev10024063m.g
Citrus clementina
Ciclev10024063m.g
I
0.731
orange1.1g046901m.g
Citrus sinensis
orange1.1g046901m.g
I
0.731
Bra016136
Brassica rapa
Bra016136
I
0.731
Bo6g113020
Brassica oleracea
Bo6g113020
I
0.729
gene27017-v1.0-hybrid
Fragaria vesca
gene27017-v1.0-hybrid
I
0.729
Cucsa.237170
Cucumis sativus
Cucsa.237170
I
0.728
Cla012661
Citrullus lanatus
Cla012661
I
0.728
28118.m000034
Ricinus communis
28118.m000034
I
0.727
Lus10006173.g
Linum usitatissimum
Lus10006173.g
I
0.727
Solyc11g042580.1
Solanum lycopersicum
Solyc11g042580.1
I
0.727
cassava45911.m1
Manihot esculenta
cassava45911.m1
I
0.726
MDP0000122739
Malus domestica
MDP0000122739
I
0.725
MDP0000151428
Malus domestica
MDP0000151428
I
0.725
Bra007975
Brassica rapa
Bra007975
I
0.725
MDP0000122740
Malus domestica
MDP0000122740
I
0.725
Lus10002953.g
Linum usitatissimum
Lus10002953.g
I
0.724
POPTR_0003s05300
Populus trichocarpa
POPTR_0003s05300
I
0.723
VIT_18s0001g05890
Vitis vinifera
VIT_18s0001g05890
I
0.723
Lus10041050.g
Linum usitatissimum
Lus10041050.g
I
0.721
Si026882m.g
Setaria italica
Si026882m.g
I
0.714
Solyc11g042560.1
Solanum lycopersicum
Solyc11g042560.1
I
0.714
ORUFI04G15010
Oryza rufipogon
ORUFI04G15010
N
0.713
ORGLA04G0108200
Oryza glaberrima
ORGLA04G0108200
N
0.713
MTR_5g008550
Medicago truncatula
MTR_5g008550
I
0.713
LPERR04G10650
Leersia perrieri
LPERR04G10650
N
0.713
ONIVA04G11950
Oryza nivara
ONIVA04G11950
N
0.713
OMERI04G12360
Oryza meridionalis
OMERI04G12360
N
0.713
Lus10041052.g
Linum usitatissimum
Lus10041052.g
N
0.712
AC198403.3_FG001
Zea mays
AC198403.3_FG001
I
0.707
Bra003924
Brassica rapa
Bra003924
I
0.705
Bo6g094210
Brassica oleracea
Bo6g094210
I
0.705
BRADI3G45997
Brachypodium distachyon
BRADI3G45997
N
0.704
MLOC_55144
Hordeum vulgare
MLOC_55144
I
0.703
Traes_4DS_97AC77E13
Triticum aestivum
Traes_4DS_97AC77E13
I
0.703
F775_17299
Aegilops tauschii
F775_17299
I
0.703
TRIUR3_32331
Triticum urartu
TRIUR3_32331
I
0.703
Traes_4BS_DD5E68382
Triticum aestivum
Traes_4BS_DD5E68382
I
0.703
Traes_4AL_D2D7703821
Triticum aestivum
Traes_4AL_D2D7703821
I
0.703
OPUNC02G18630
Oryza punctata
OPUNC02G18630
N
0.700
GSMUA_Achr2G20760_001
Musa acuminata
GSMUA_Achr2G20760_001
I
0.697
Bostr.10273s0203
Boechera stricta
Bostr.10273s0203
I
0.696
BRADI4G21265
Brachypodium distachyon
BRADI4G21265
I
0.695
LPERR11G07100
Leersia perrieri
LPERR11G07100
I
0.695
OB11G16300
Oryza brachyantha
OB11G16300
I
0.694
Pavir.J26137
Panicum virgatum
Pavir.J26137
I
0.694
GSMUA_Achr8G16250_001
Musa acuminata
GSMUA_Achr8G16250_001
I
0.694
Pavir.J22217
Panicum virgatum
Pavir.J22217
I
0.694
BGIOSGA034227
Oryza indica
BGIOSGA034227
I
0.694
OGLUM11G07800
Oryza glumaepatula
OGLUM11G07800
I
0.694
ORUFI11G08240
Oryza rufipogon
ORUFI11G08240
I
0.694
ORGLA11G0070000
Oryza glaberrima
ORGLA11G0070000
I
0.694
ONIVA11G08160
Oryza nivara
ONIVA11G08160
I
0.694
OS11G0242300
Oryza sativa
OS11G0242300
I
0.694
OPUNC11G07750
Oryza punctata
OPUNC11G07750
I
0.694
Sb05g007135
Sorghum bicolor
Sb05g007135
I
0.694
OMERI11G06840
Oryza meridionalis
OMERI11G06840
I
0.694
OS02G0558700
Oryza sativa
OS02G0558700
N
0.693
BGIOSGA006249
Oryza indica
BGIOSGA006249
N
0.693
ORUFI02G21740
Oryza rufipogon
ORUFI02G21740
N
0.693
LPERR02G16700
Leersia perrieri
LPERR02G16700
N
0.693
OB02G28310
Oryza brachyantha
OB02G28310
N
0.693
OGLUM02G20980
Oryza glumaepatula
OGLUM02G20980
N
0.693
OMERI02G20440
Oryza meridionalis
OMERI02G20440
N
0.693
ONIVA02G22690
Oryza nivara
ONIVA02G22690
N
0.693
TRIUR3_32168
Triticum urartu
TRIUR3_32168
I
0.692
Traes_2BL_9CD6E043A
Triticum aestivum
Traes_2BL_9CD6E043A
I
0.691
Ca_15064
Cicer arietinum
Ca_15064
I
0.689
Lus10003513.g
Linum usitatissimum
Lus10003513.g
N
0.688
GSMUA_Achr11G12650_001
Musa acuminata
GSMUA_Achr11G12650_001
N
0.688