chr2.CM0018.610.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr2.CM0018.610.nd T010163_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.755 0.820
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.755 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0018.610.nd AP2 22 73

Links

Other AP2 family TFs
Other Lotus japonicus TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.785
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.784
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.779
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.777
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.770
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.767
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.767
Pm004272 Prunus mume Pm004272 I 0.767
TCM_036269 Theobroma cacao TCM_036269 I 0.766
Cla012665 Citrullus lanatus Cla012665 I 0.766
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.760
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.758
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.756
ERF021 Arabidopsis thaliana AT1G71450 D 0.755
Bo2g072910 Brassica oleracea Bo2g072910 I 0.755
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.755
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.755
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.755
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.754
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.753
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.750
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.750
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.750
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.750
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.748
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.747
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.747
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.745
MDP0000122739 Malus domestica MDP0000122739 I 0.745
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.745
MDP0000151428 Malus domestica MDP0000151428 I 0.745
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.745
MDP0000122740 Malus domestica MDP0000122740 I 0.745
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.742
Ca_15064 Cicer arietinum Ca_15064 I 0.742
Bra016136 Brassica rapa Bra016136 I 0.742
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.741
Bra010210 Brassica rapa Bra010210 I 0.741
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.741
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.741
Pm004269 Prunus mume Pm004269 I 0.741
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.741
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.741
Bra007975 Brassica rapa Bra007975 I 0.740
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.740
Bo8g027240 Brassica oleracea Bo8g027240 I 0.740
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.740
Bo6g113020 Brassica oleracea Bo6g113020 I 0.740
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.739
Cla012661 Citrullus lanatus Cla012661 I 0.739
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.739
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.739
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.739
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.738
MDP0000283350 Malus domestica MDP0000283350 I 0.738
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.738
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.737
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.736
ERF022 Arabidopsis thaliana AT1G33760 I 0.735
Bo5g086680 Brassica oleracea Bo5g086680 I 0.735
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.733
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.733
28118.m000034 Ricinus communis 28118.m000034 I 0.732
Si026882m.g Setaria italica Si026882m.g I 0.731
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.730
27805.m000021 Ricinus communis 27805.m000021 I 0.730
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.729
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.728
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.727
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.725
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.722
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.722
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.721
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.721
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.721
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.721
F775_17299 Aegilops tauschii F775_17299 I 0.721
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.721
Bra028009 Brassica rapa Bra028009 I 0.721
TCM_036270 Theobroma cacao TCM_036270 I 0.720
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.719
Bo6g094210 Brassica oleracea Bo6g094210 I 0.719
Bra003924 Brassica rapa Bra003924 I 0.719
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.718
Bo6g046850 Brassica oleracea Bo6g046850 I 0.714
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.714
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.713
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.712
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.711
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.711
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.711
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.711
OB11G16300 Oryza brachyantha OB11G16300 I 0.711
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.711
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.711
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.711
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.711
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.711
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.711
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.711
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.711
OS11G0242300 Oryza sativa OS11G0242300 I 0.711
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.710
GSMUA_Achr8G16250_001 Musa acuminata GSMUA_Achr8G16250_001 I 0.708
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.705
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N 0.703
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.703
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.702
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.701
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.695
Lus10041052.g Linum usitatissimum Lus10041052.g N 0.693
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.691
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.691
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I 0.686
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I 0.686
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I 0.686
mgf020568m Mimulus guttatus mgf020568m I 0.686
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I 0.686
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I 0.684
TCM_005130 Theobroma cacao TCM_005130 I 0.684
Ciclev10022410m.g Citrus clementina Ciclev10022410m.g I 0.682
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I 0.682
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I 0.681
TRIUR3_32168 Triticum urartu TRIUR3_32168 I 0.679
Traes_2BL_9CD6E043A Triticum aestivum Traes_2BL_9CD6E043A I 0.679
cassava43608.valid.m1 Manihot esculenta cassava43608.valid.m1 I 0.678
Ca_01325 Cicer arietinum Ca_01325 I 0.677