CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10023857m.g
(
Citrus clementina
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Ciclev10023857m.g
T008044_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF021
M06593_2.00
Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND
Dap-seq
OMalley et al.(2016)
AT1G71450_col_a
0.792
0.920
ERF021
M06594_2.00
Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN
Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a
0.792
0.920
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10023857m
AP2
18
69
SSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGR
Links
Other
AP2
family TFs
Other
Citrus clementina
TFs
121 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g035756m.g
Citrus sinensis
orange1.1g035756m.g
I
0.826
PRUPE_ppa012354mg
Prunus persica
PRUPE_ppa012354mg
I
0.820
Pm004269
Prunus mume
Pm004269
I
0.820
GLYMA11G01640
Glycine max
GLYMA11G01640
I
0.811
GLYMA01G44140
Glycine max
GLYMA01G44140
I
0.811
evm.TU.supercontig_21.69
Carica papaya
evm.TU.supercontig_21.69
I
0.811
chr2.CM0018.470.nd
Lotus japonicus
chr2.CM0018.470.nd
I
0.811
MTR_5g008590
Medicago truncatula
MTR_5g008590
I
0.811
Eucgr.F02974
Eucalyptus grandis
Eucgr.F02974
I
0.807
Gorai.009G266600
Gossypium raimondii
Gorai.009G266600
I
0.805
MDP0000283350
Malus domestica
MDP0000283350
I
0.801
POPTR_0019s10420
Populus trichocarpa
POPTR_0019s10420
I
0.800
SapurV1A.1130s0100
Salix purpurea
SapurV1A.1130s0100
I
0.800
SapurV1A.1331s0040
Salix purpurea
SapurV1A.1331s0040
I
0.800
cassava8552.m1
Manihot esculenta
cassava8552.m1
I
0.800
POPTR_0013s10340
Populus trichocarpa
POPTR_0013s10340
I
0.799
ERF021
Arabidopsis thaliana
AT1G71450
D
0.792
Bo2g072910
Brassica oleracea
Bo2g072910
I
0.792
fgenesh2_kg.2__1406__AT1G71450.1
Arabidopsis lyrata
fgenesh2_kg.2__1406__AT1G71450.1
I
0.792
Cagra.2418s0001
Capsella grandiflora
Cagra.2418s0001
I
0.792
Carubv10022349m.g
Capsella rubella
Carubv10022349m.g
I
0.792
cassava43172.valid.m1
Manihot esculenta
cassava43172.valid.m1
I
0.790
Thhalv10019659m.g
Eutrema salsugineum
Thhalv10019659m.g
I
0.789
Cla012665
Citrullus lanatus
Cla012665
I
0.789
gene27021-v1.0-hybrid
Fragaria vesca
gene27021-v1.0-hybrid
I
0.786
Cucsa.237150
Cucumis sativus
Cucsa.237150
I
0.783
Bra016136
Brassica rapa
Bra016136
I
0.783
SapurV1A.0551s0030
Salix purpurea
SapurV1A.0551s0030
I
0.783
POPTR_0001s18180
Populus trichocarpa
POPTR_0001s18180
I
0.781
Bra007975
Brassica rapa
Bra007975
I
0.777
Bo6g113020
Brassica oleracea
Bo6g113020
I
0.776
TCM_036269
Theobroma cacao
TCM_036269
I
0.776
Gorai.009G266700
Gossypium raimondii
Gorai.009G266700
I
0.775
Gorai.005G116500
Gossypium raimondii
Gorai.005G116500
I
0.774
evm.TU.supercontig_21.70
Carica papaya
evm.TU.supercontig_21.70
I
0.773
Eucgr.F02975
Eucalyptus grandis
Eucgr.F02975
I
0.771
Carubv10012215m.g
Capsella rubella
Carubv10012215m.g
I
0.770
28118.m000034
Ricinus communis
28118.m000034
I
0.769
TCM_036270
Theobroma cacao
TCM_036270
I
0.765
Lus10006173.g
Linum usitatissimum
Lus10006173.g
I
0.764
VIT_18s0001g05850
Vitis vinifera
VIT_18s0001g05850
I
0.758
Lus10041050.g
Linum usitatissimum
Lus10041050.g
I
0.758
Solyc11g042580.1
Solanum lycopersicum
Solyc11g042580.1
I
0.755
Bo6g094210
Brassica oleracea
Bo6g094210
I
0.753
Bra003924
Brassica rapa
Bra003924
I
0.753
Bo8g027240
Brassica oleracea
Bo8g027240
I
0.752
VIT_18s0001g05890
Vitis vinifera
VIT_18s0001g05890
I
0.751
PGSC0003DMG400018054
Solanum tuberosum
PGSC0003DMG400018054
I
0.749
Bostr.3359s0006
Boechera stricta
Bostr.3359s0006
I
0.749
Bostr.10273s0203
Boechera stricta
Bostr.10273s0203
I
0.748
Ciclev10024063m.g
Citrus clementina
Ciclev10024063m.g
I
0.748
orange1.1g046901m.g
Citrus sinensis
orange1.1g046901m.g
I
0.748
Thhalv10010002m.g
Eutrema salsugineum
Thhalv10010002m.g
I
0.747
GLYMA01G44130
Glycine max
GLYMA01G44130
I
0.747
ERF022
Arabidopsis thaliana
AT1G33760
I
0.746
Bra010210
Brassica rapa
Bra010210
I
0.746
gene27017-v1.0-hybrid
Fragaria vesca
gene27017-v1.0-hybrid
I
0.742
PGSC0003DMG400017813
Solanum tuberosum
PGSC0003DMG400017813
I
0.742
Pm004272
Prunus mume
Pm004272
I
0.737
PRUPE_ppa018178mg
Prunus persica
PRUPE_ppa018178mg
I
0.736
chr2.CM0018.610.nd
Lotus japonicus
chr2.CM0018.610.nd
I
0.733
27805.m000021
Ricinus communis
27805.m000021
I
0.732
Bo5g086680
Brassica oleracea
Bo5g086680
I
0.731
Cucsa.237170
Cucumis sativus
Cucsa.237170
I
0.727
Cla012661
Citrullus lanatus
Cla012661
I
0.727
Carubv10011715m.g
Capsella rubella
Carubv10011715m.g
I
0.726
Bra028009
Brassica rapa
Bra028009
I
0.726
MDP0000122740
Malus domestica
MDP0000122740
I
0.724
AMTR_s00099p00039760
Amborella trichopoda
AMTR_s00099p00039760
I
0.724
MDP0000122739
Malus domestica
MDP0000122739
I
0.724
MDP0000151428
Malus domestica
MDP0000151428
I
0.724
Si026882m.g
Setaria italica
Si026882m.g
I
0.723
Bo6g046850
Brassica oleracea
Bo6g046850
I
0.720
SapurV1A.1130s0090
Salix purpurea
SapurV1A.1130s0090
I
0.718
SapurV1A.1331s0050
Salix purpurea
SapurV1A.1331s0050
I
0.718
MTR_5g008550
Medicago truncatula
MTR_5g008550
I
0.717
POPTR_0019s10430
Populus trichocarpa
POPTR_0019s10430
I
0.716
SapurV1A.3106s0010
Salix purpurea
SapurV1A.3106s0010
I
0.716
POPTR_0013s10330
Populus trichocarpa
POPTR_0013s10330
I
0.716
SapurV1A.0551s0040
Salix purpurea
SapurV1A.0551s0040
I
0.716
AC198403.3_FG001
Zea mays
AC198403.3_FG001
I
0.715
Solyc11g042560.1
Solanum lycopersicum
Solyc11g042560.1
I
0.713
scaffold_103754.1
Arabidopsis lyrata
scaffold_103754.1
I
0.711
Ca_15064
Cicer arietinum
Ca_15064
I
0.707
Lus10002953.g
Linum usitatissimum
Lus10002953.g
I
0.707
cassava45911.m1
Manihot esculenta
cassava45911.m1
I
0.705
POPTR_0003s05300
Populus trichocarpa
POPTR_0003s05300
I
0.705
OB11G16300
Oryza brachyantha
OB11G16300
I
0.703
OGLUM11G07800
Oryza glumaepatula
OGLUM11G07800
I
0.703
LPERR11G07100
Leersia perrieri
LPERR11G07100
I
0.703
BGIOSGA034227
Oryza indica
BGIOSGA034227
I
0.703
BRADI4G21265
Brachypodium distachyon
BRADI4G21265
I
0.703
OMERI11G06840
Oryza meridionalis
OMERI11G06840
I
0.703
ORGLA11G0070000
Oryza glaberrima
ORGLA11G0070000
I
0.703
Pavir.J22217
Panicum virgatum
Pavir.J22217
I
0.703
Sb05g007135
Sorghum bicolor
Sb05g007135
I
0.703
OS11G0242300
Oryza sativa
OS11G0242300
I
0.703
ORUFI11G08240
Oryza rufipogon
ORUFI11G08240
I
0.703
Pavir.J26137
Panicum virgatum
Pavir.J26137
I
0.703
ONIVA11G08160
Oryza nivara
ONIVA11G08160
I
0.703
OPUNC11G07750
Oryza punctata
OPUNC11G07750
I
0.703
GSMUA_Achr2G20760_001
Musa acuminata
GSMUA_Achr2G20760_001
I
0.702
Traes_2BL_9CD6E043A
Triticum aestivum
Traes_2BL_9CD6E043A
I
0.701
GSMUA_Achr8G16250_001
Musa acuminata
GSMUA_Achr8G16250_001
I
0.700
TRIUR3_32168
Triticum urartu
TRIUR3_32168
I
0.699
Traes_4AL_D2D7703821
Triticum aestivum
Traes_4AL_D2D7703821
I
0.697
F775_17299
Aegilops tauschii
F775_17299
I
0.697
MLOC_55144
Hordeum vulgare
MLOC_55144
I
0.697
Traes_4BS_DD5E68382
Triticum aestivum
Traes_4BS_DD5E68382
I
0.697
Traes_4DS_97AC77E13
Triticum aestivum
Traes_4DS_97AC77E13
I
0.697
TRIUR3_32331
Triticum urartu
TRIUR3_32331
I
0.697
Eucgr.F02976
Eucalyptus grandis
Eucgr.F02976
I
0.696
GSMUA_Achr11G12650_001
Musa acuminata
GSMUA_Achr11G12650_001
N
0.693
AMTR_s00021p00223240
Amborella trichopoda
AMTR_s00021p00223240
I
0.690
SapurV1A.0601s0170
Salix purpurea
SapurV1A.0601s0170
N
0.690
Lus10041052.g
Linum usitatissimum
Lus10041052.g
N
0.689
LPERR04G10650
Leersia perrieri
LPERR04G10650
N
0.679
ORUFI04G15010
Oryza rufipogon
ORUFI04G15010
N
0.678
ONIVA04G11950
Oryza nivara
ONIVA04G11950
N
0.678
OMERI04G12360
Oryza meridionalis
OMERI04G12360
N
0.678
ORGLA04G0108200
Oryza glaberrima
ORGLA04G0108200
N
0.678