Bostr.13671s0200 (Boechera stricta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Bostr.13671s0200 T007571_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.846 0.940
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.846 0.940
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.846 0.940
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.846 0.940
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.846 0.940
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.846 0.940
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.768 0.780
DREB1E
M00963_2.00 		Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana 		0.716 0.780
DREB1E
M06589_2.00 		Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN		 Dap-seq
OMalley et al.(2016)
DDF2_col_a 		0.716 0.780
DREB1E
M09702_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_03 		0.716 0.780
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.693 0.740
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.693 0.740
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.693 0.740
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.693 0.740
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.690 0.740
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.690 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.13671s0200.1.p AP2 28 79

Links

Other AP2 family TFs
Other Boechera stricta TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30147.m014313 Ricinus communis 30147.m014313 I 0.696
30190.m011119 Ricinus communis 30190.m011119 I 0.723
30190.m011120 Ricinus communis 30190.m011120 I 0.699
60638.m00016 Ricinus communis 60638.m00016 I 0.743
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I
DREB1E Arabidopsis thaliana AT1G63030 D 0.716
DREB1C Arabidopsis thaliana AT4G25470 D
DREB1A Arabidopsis thaliana AT4G25480 D 0.693
DREB1D Arabidopsis thaliana AT5G51990 D 0.690
DREB1G Oryza indica BGIOSGA008804 I
Bo9g104770 Brassica oleracea Bo9g104770 I 0.690
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.690
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.686
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.712
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.686
Bra028290 Brassica rapa Bra028290 I 0.690
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.678
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.690
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.715
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.686
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.686
Carubv10006965m.g Capsella rubella Carubv10006965m.g I
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.690
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.693
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.722
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.766
cassava41218.m1 Manihot esculenta cassava41218.m1 I
Ca_02407 Cicer arietinum Ca_02407 N
Ca_03665 Cicer arietinum Ca_03665 N
Ca_04504 Cicer arietinum Ca_04504 I
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.756
Cla002362 Citrullus lanatus Cla002362 I 0.684
Cla006315 Citrullus lanatus Cla006315 I 0.708
Cla011674 Citrullus lanatus Cla011674 I 0.743
Cucsa.166340 Cucumis sativus Cucsa.166340 I
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.710
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.704
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.724
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.711
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.708
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.686
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.715
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.725
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.729
GLYMA10G38440 Glycine max GLYMA10G38440 I
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.729
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.741
GLYMA20G29410 Glycine max GLYMA20G29410 I
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.722
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.722
GRMZM2G137341 Zea mays GRMZM2G137341 I
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.762
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.733
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.720
LPERR02G22610 Leersia perrieri LPERR02G22610 I
Lus10027412.g Linum usitatissimum Lus10027412.g I
Lus10031657.g Linum usitatissimum Lus10031657.g I
MDP0000154764 Malus domestica MDP0000154764 I 0.725
MDP0000198054 Malus domestica MDP0000198054 I 0.712
mgf016974m Mimulus guttatus mgf016974m I
mgf017136m Mimulus guttatus mgf017136m I 0.759
mgf017477m Mimulus guttatus mgf017477m N
mgf018631m Mimulus guttatus mgf018631m I
mgf018934m Mimulus guttatus mgf018934m I
mgf019061m Mimulus guttatus mgf019061m I 0.762
mgf022408m Mimulus guttatus mgf022408m I
mgf026339m Mimulus guttatus mgf026339m I
mgf026642m Mimulus guttatus mgf026642m I 0.722
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.678
MTR_1g101600 Medicago truncatula MTR_1g101600 I
MTR_6g465430 Medicago truncatula MTR_6g465430 I
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.680
MTR_6g465690 Medicago truncatula MTR_6g465690 I
MTR_6g466000 Medicago truncatula MTR_6g466000 I
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.704
OBART02G27760 Oryza barthii OBART02G27760 I
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I
OMERI02G26980 Oryza meridionalis OMERI02G26980 I
ONIVA02G30790 Oryza nivara ONIVA02G30790 I
OPUNC02G25480 Oryza punctata OPUNC02G25480 I
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.679
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I
DREB1G Oryza sativa OS02G0677300 D
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.755
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.684
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.681
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I
PK23332.1 Cannabis sativa PK23332.1 I 0.715
Pm019386 Prunus mume Pm019386 I
Pm023769 Prunus mume Pm023769 I 0.719
Pm023772 Prunus mume Pm023772 I 0.725
Pm023775 Prunus mume Pm023775 I 0.722
Pm023777 Prunus mume Pm023777 N
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.744
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.738
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.746
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.722
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.730
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.722
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.717
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.703
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.719
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.723
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.714
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.746
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.738
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.723
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.711
Sb04g031950 Sorghum bicolor Sb04g031950 I
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.690
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.694
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.703
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.699
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.695
Solyc12g056430.1 Solanum lycopersicum Solyc12g056430.1 I
TCM_016175 Theobroma cacao TCM_016175 I 0.705
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.690
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.712
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.756
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.710