gene22916-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene22916-v1.0-hybrid T258351_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.792 0.792
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna22916.1-v1.0-hybrid MADS box 10 58

Links

Other MADS box family TFs
Other Fragaria vesca TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.792
Bo2g104810 Brassica oleracea Bo2g104810 I 0.833
Bo9g078450 Brassica oleracea Bo9g078450 I 0.792
Bra018490 Brassica rapa Bra018490 I 0.854
Bra029469 Brassica rapa Bra029469 I 0.792
Bra041022 Brassica rapa Bra041022 I 0.733
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.822
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.844
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.711
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.867
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.875
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.854
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.833
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.822
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.787
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.771
TCM_025670 Theobroma cacao TCM_025670 I 0.750
TCM_025671 Theobroma cacao TCM_025671 I 0.708
TCM_026842 Theobroma cacao TCM_026842 I 0.812
TCM_042799 Theobroma cacao TCM_042799 I 0.708
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.875
Ca_06495 Cicer arietinum Ca_06495 I 0.818
Ca_08934 Cicer arietinum Ca_08934 I 0.727
Ca_13275 Cicer arietinum Ca_13275 I 0.867
Cla005226 Citrullus lanatus Cla005226 I 0.778
Cla009163 Citrullus lanatus Cla009163 I 0.750
Pm003257 Prunus mume Pm003257 I 0.787
Pm004396 Prunus mume Pm004396 I 0.822
30128.m008984 Ricinus communis 30128.m008984 I 0.812
30199.m000879 Ricinus communis 30199.m000879 I 0.809
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.917
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.822
mgf026186m Mimulus guttatus mgf026186m I 0.727
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.812
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.792
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.792
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.833
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.833
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.783
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.717
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.739
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.756
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.787
evm.TU.contig_25253.5 Carica papaya evm.TU.contig_25253.5 I 0.759
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.756
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.778
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.711
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.818
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.792
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.765
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.756
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.705
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.721
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
evm.TU.contig_40008 Carica papaya evm.TU.contig_40008 I 0.759
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.800
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.818
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.756
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.745
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.729
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.750
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.750
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.804
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.756
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.708
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.738
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.733
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.804
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.771
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.771
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.854
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.938
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.875
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.745
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.792
Gorai.013G210400 Gossypium raimondii Gorai.013G210400 I 0.756
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.833
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.812
MDP0000846004 Malus domestica MDP0000846004 I 0.875
MDP0000925348 Malus domestica MDP0000925348 I 0.792
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.783
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.812
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.812
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.812
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.729
Thhalv10019810m.g Eutrema salsugineum Thhalv10019810m.g I 0.702
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.792
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.792
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.792
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.750
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.854
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.744
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.778
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.759
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.733
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.733
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.741
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.812
GLYMA10G28320 Glycine max GLYMA10G28320 N 0.729
MTR_1g077300 Medicago truncatula MTR_1g077300 N 0.708
MTR_1g077320 Medicago truncatula MTR_1g077320 N 0.708
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.750
MTR_3g466900 Medicago truncatula MTR_3g466900 N 0.704
MTR_4g028720 Medicago truncatula MTR_4g028720 N 0.729
MTR_5g047580 Medicago truncatula MTR_5g047580 N 0.729
MTR_7g011950 Medicago truncatula MTR_7g011950 N 0.708
Ca_08369 Cicer arietinum Ca_08369 N 0.771
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.739
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.711
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.733
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.711
evm.TU.contig_46342 Carica papaya evm.TU.contig_46342 N 0.733
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.739
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.750
evm.TU.supercontig_30.163 Carica papaya evm.TU.supercontig_30.163 N 0.733
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.708
Gorai.011G189000 Gossypium raimondii Gorai.011G189000 N 0.702
Gorai.013G210700 Gossypium raimondii Gorai.013G210700 N 0.708