AT3G05860 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT3G05860 T252880_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G05860.1 MADS box 10 58
AT3G05860.2 MADS box 10 58
AT3G05860.3 MADS box 10 58

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.000
AGL80 Arabidopsis thaliana AT5G48670 D 0.771
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.938
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.000
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.771
Bo9g078450 Brassica oleracea Bo9g078450 I 0.729
Bo2g104810 Brassica oleracea Bo2g104810 I 0.729
Bra029469 Brassica rapa Bra029469 I 0.729
Bra018490 Brassica rapa Bra018490 I 0.729
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.729
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.729
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.000
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.000
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.000
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.000
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.000
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.000
evm.TU.contig_36543 Carica papaya evm.TU.contig_36543 I 0.000
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.000
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.000
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.000
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.000
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.000
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.000
evm.TU.supercontig_135.5 Carica papaya evm.TU.supercontig_135.5 N 0.000
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.000
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.711
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.000
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.000
Ca_13275 Cicer arietinum Ca_13275 I 0.000
Ca_06495 Cicer arietinum Ca_06495 I 0.705
Ca_08369 Cicer arietinum Ca_08369 N 0.000
Cla005226 Citrullus lanatus Cla005226 I 0.000
Cla009163 Citrullus lanatus Cla009163 I 0.000
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.000
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.729
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.729
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.000
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.000
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.000
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.000
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.000
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.000
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.000
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.000
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.708
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.771
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.771
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.771
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.000
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.708
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.708
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.729
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.000
GLYMA10G28320 Glycine max GLYMA10G28320 N 0.000
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.000
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.000
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.000
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.000
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.000
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.000
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.000
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.000
LjSGA_024860.1 Lotus japonicus LjSGA_024860.1 I 0.000
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.000
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.000
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.000
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.000
MDP0000925348 Malus domestica MDP0000925348 I 0.000
MDP0000846004 Malus domestica MDP0000846004 I 0.000
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.750
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.000
mgf026186m Mimulus guttatus mgf026186m I 0.705
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.708
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.729
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.750
Pm004396 Prunus mume Pm004396 I 0.000
Pm003257 Prunus mume Pm003257 I 0.702
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.000
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.702
30199.m000879 Ricinus communis 30199.m000879 I 0.000
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.000
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.000
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.729
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.000
TCM_025670 Theobroma cacao TCM_025670 I 0.708
TCM_025671 Theobroma cacao TCM_025671 I 0.702
TCM_025676 Theobroma cacao TCM_025676 N 0.000
TCM_026842 Theobroma cacao TCM_026842 I 0.750
TCM_026845 Theobroma cacao TCM_026845 I 0.708
TCM_042799 Theobroma cacao TCM_042799 I 0.000
TCM_042848 Theobroma cacao TCM_042848 N 0.000
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.750