Cmyd_10016425 (Chelonia mydas)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cmyd_10016425 T225769_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Dbx1
M00451_2.00 		Mus musculus
WTTAATTA
TAATTAAW		 PBM
Berger et al.(2008)
Dbx1_3486 		0.867 0.964
Dbx2
M00499_2.00 		Mus musculus
NNDTNNN
NNNAHNN		 PBM
Berger et al.(2008)
Dbx2_3487 		0.830 0.875
Dbx
M02128_2.00 		Drosophila melanogaster
WTTAATTA
TAATTAAW		 PBM
Weirauch et al.(2014)
pTH6051 		0.818 0.875
Dbx
M06550_2.00 		Drosophila melanogaster
TTWATKA
TMATWAA		 B1H
Mathelier et al.(2014)
MA0174.1 		0.818 0.875
Hlx
M00485_2.00 		Mus musculus
NNNAWND
HNWTNNN		 PBM
Berger et al.(2008)
Hlx1_2350 		0.733 0.714
H2.0
M06489_2.00 		Drosophila melanogaster
WTWATDA
THATWAW		 B1H
Mathelier et al.(2014)
MA0448.1 		0.732 0.714
H2.0
M06250_2.00 		Drosophila melanogaster
TWWWWDA
THAWWWA		 B1H
Zhu et al.(2011)
H2.0_Cell_FBgn0001170 		0.732 0.714
H2.0
M06251_2.00 		Drosophila melanogaster
WTWATTRN
NYAATWAW		 B1H
Zhu et al.(2011)
H2.0_SOLEXA_FBgn0001170 		0.732 0.714
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10016425 Homeodomain 88 143

Links

Other Homeodomain family TFs
Other Chelonia mydas TFs

271 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TB1 Oryza sativa OS03G0706500 D
PK12240.1 Cannabis sativa PK12240.1 D
PK19717.1 Cannabis sativa PK19717.1 D
BRC2 Arabidopsis thaliana AT1G68800 I
BRC1 Arabidopsis thaliana AT3G18550 I
BGIOSGA013417 Oryza indica BGIOSGA013417 I
BGIOSGA028717 Oryza indica BGIOSGA028717 I
BGIOSGA030744 Oryza indica BGIOSGA030744 I
Bo1g117490 Brassica oleracea Bo1g117490 I
Bo2g055640 Brassica oleracea Bo2g055640 I
Bo2g061250 Brassica oleracea Bo2g061250 I
Bo3g071560 Brassica oleracea Bo3g071560 I
Bo6g099040 Brassica oleracea Bo6g099040 I
Bo6g103670 Brassica oleracea Bo6g103670 I
Bra001710 Brassica rapa Bra001710 I
Bra034010 Brassica rapa Bra034010 I
Bra037579 Brassica rapa Bra037579 I
Bra038350 Brassica rapa Bra038350 I
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I
F775_01923 Aegilops tauschii F775_01923 I
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I
GLYMA04G22407 Glycine max GLYMA04G22407 I
GLYMA05G07943 Glycine max GLYMA05G07943 I
GLYMA17G13065 Glycine max GLYMA17G13065 I
GRMZM2G055024 Zea mays GRMZM2G055024 I
GRMZM2G060319 Zea mays GRMZM2G060319 I
GRMZM2G064628 Zea mays GRMZM2G064628 I
GRMZM2G110242 Zea mays GRMZM2G110242 I
GRMZM2G166687 Zea mays GRMZM2G166687 I
GSMUA_Achr2G21050_001 Musa acuminata GSMUA_Achr2G21050_001 I
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I
LPERR03G25950 Leersia perrieri LPERR03G25950 I
LPERR08G12880 Leersia perrieri LPERR08G12880 I
LPERR09G06870 Leersia perrieri LPERR09G06870 I
MLOC_4614 Hordeum vulgare MLOC_4614 I
MLOC_58142 Hordeum vulgare MLOC_58142 I
MTR_4g111935 Medicago truncatula MTR_4g111935 I
OBART03G31290 Oryza barthii OBART03G31290 I
OBART09G10040 Oryza barthii OBART09G10040 I
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I
OGLUM08G16380 Oryza glumaepatula OGLUM08G16380 I
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I
OMERI03G27910 Oryza meridionalis OMERI03G27910 I
OMERI08G12900 Oryza meridionalis OMERI08G12900 I
OMERI09G07770 Oryza meridionalis OMERI09G07770 I
ONIVA03G32600 Oryza nivara ONIVA03G32600 I
ONIVA08G16720 Oryza nivara ONIVA08G16720 I
ONIVA09G09540 Oryza nivara ONIVA09G09540 I
OPUNC08G13710 Oryza punctata OPUNC08G13710 I
OPUNC09G08520 Oryza punctata OPUNC09G08520 I
ORGLA03G0289500 Oryza glaberrima ORGLA03G0289500 I
ORGLA08G0137200 Oryza glaberrima ORGLA08G0137200 I
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I
ORUFI08G17540 Oryza rufipogon ORUFI08G17540 I
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I
OS08G0432300 Oryza sativa OS08G0432300 I
OS09G0410500 Oryza sativa OS09G0410500 I
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I
Sb02g024450 Sorghum bicolor Sb02g024450 I
Sb07g021140 Sorghum bicolor Sb07g021140 I
Si015230m.g Setaria italica Si015230m.g I
Si033183m.g Setaria italica Si033183m.g I
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I
TCM_011874 Theobroma cacao TCM_011874 I
TCM_012252 Theobroma cacao TCM_012252 I
TCM_019518 Theobroma cacao TCM_019518 I
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I
TRIUR3_20728 Triticum urartu TRIUR3_20728 I
BRC2 Vitis vinifera VIT_01s0011g02920 I
Cla002355 Citrullus lanatus Cla002355 I
Cla007227 Citrullus lanatus Cla007227 I
Cla016709 Citrullus lanatus Cla016709 I
Pm015499 Prunus mume Pm015499 I
Pm029002 Prunus mume Pm029002 I
Pm030202 Prunus mume Pm030202 I
29738.m001041 Ricinus communis 29738.m001041 I
30167.m000856 Ricinus communis 30167.m000856 I
cassava10552.m1 Manihot esculenta cassava10552.m1 I
cassava16230.m1 Manihot esculenta cassava16230.m1 I
cassava32886.m1 Manihot esculenta cassava32886.m1 I
cassava9378.m1 Manihot esculenta cassava9378.m1 I
Cucsa.031600 Cucumis sativus Cucsa.031600 I
Cucsa.238090 Cucumis sativus Cucsa.238090 I
Cucsa.280880 Cucumis sativus Cucsa.280880 I
Cucsa.283930 Cucumis sativus Cucsa.283930 I
mgf022233m Mimulus guttatus mgf022233m I
mgf024687m Mimulus guttatus mgf024687m I
mgf026636m Mimulus guttatus mgf026636m I
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I
Bostr.19424s0807 Boechera stricta Bostr.19424s0807 I
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I
Cagra.1681s0023 Capsella grandiflora Cagra.1681s0023 I
Carubv10013748m.g Capsella rubella Carubv10013748m.g I
Carubv10020487m.g Capsella rubella Carubv10020487m.g I
Carubv10020555m.g Capsella rubella Carubv10020555m.g I
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I
Lus10021713.g Linum usitatissimum Lus10021713.g I
Lus10035055.g Linum usitatissimum Lus10035055.g I
MDP0000173048 Malus domestica MDP0000173048 I
MDP0000272980 Malus domestica MDP0000272980 I
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I
Bo5g117410 Brassica oleracea Bo5g117410 N
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N
GLYMA06G23410 Glycine max GLYMA06G23410 N
OBART08G15630 Oryza barthii OBART08G15630 N
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N
BRC1 Arabidopsis lyrata scaffold_302193.1 N
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N
Cla018797 Citrullus lanatus Cla018797 N
Cla019282 Citrullus lanatus Cla019282 N
Cucsa.113660 Cucumis sativus Cucsa.113660 N
Cucsa.198860 Cucumis sativus Cucsa.198860 N
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N
Lus10032465.g Linum usitatissimum Lus10032465.g N
MDP0000219838 Malus domestica MDP0000219838 N
MDP0000224810 Malus domestica MDP0000224810 N
Thhalv10021948m.g Eutrema salsugineum Thhalv10021948m.g N