30199.m000879 (Ricinus communis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 30199.m000879 T257166_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.851 0.851
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30199.m000879 MADS box 10 57

Links

Other MADS box family TFs
Other Ricinus communis TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.833
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.723
Bo2g104810 Brassica oleracea Bo2g104810 I 0.766
Bo9g078450 Brassica oleracea Bo9g078450 I 0.787
Bra018490 Brassica rapa Bra018490 I 0.787
Bra029469 Brassica rapa Bra029469 I 0.787
Bra041022 Brassica rapa Bra041022 I 0.711
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.844
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.830
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.800
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.851
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.872
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.894
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.872
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.911
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.745
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.787
TCM_025670 Theobroma cacao TCM_025670 I 0.771
TCM_025671 Theobroma cacao TCM_025671 I 0.787
TCM_026842 Theobroma cacao TCM_026842 I 0.872
TCM_026845 Theobroma cacao TCM_026845 I 0.766
TCM_042799 Theobroma cacao TCM_042799 I 0.723
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.894
Ca_06495 Cicer arietinum Ca_06495 I 0.766
Ca_13275 Cicer arietinum Ca_13275 I 0.851
Cla005226 Citrullus lanatus Cla005226 I 0.822
Cla009163 Citrullus lanatus Cla009163 I 0.723
Pm003257 Prunus mume Pm003257 I 0.745
Pm004396 Prunus mume Pm004396 I 0.911
30128.m008984 Ricinus communis 30128.m008984 I 0.812
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.822
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.875
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.787
mgf026186m Mimulus guttatus mgf026186m I 0.818
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.723
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.745
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.745
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.833
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.771
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.771
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.875
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.875
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.848
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.787
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.826
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.787
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.848
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.745
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.800
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.809
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.778
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.787
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.723
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.830
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.745
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.765
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.778
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.702
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.723
evm.TU.contig_36543 Carica papaya evm.TU.contig_36543 I 0.702
evm.TU.contig_40008 Carica papaya evm.TU.contig_40008 I 0.759
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.773
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.787
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.745
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.787
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.766
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.766
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.787
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.750
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.809
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.778
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.745
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.778
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.809
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.787
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.708
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.854
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.809
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.872
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.830
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.787
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.809
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.702
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.787
MDP0000846004 Malus domestica MDP0000846004 I 0.894
MDP0000925348 Malus domestica MDP0000925348 I 0.872
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.848
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.894
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.851
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.851
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.705
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.723
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.766
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.809
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.809
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.723
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.787
LjSGA_024860.1 Lotus japonicus LjSGA_024860.1 I 0.708
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.702
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.733
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.787
GLYMA03G19880 Glycine max GLYMA03G19880 N 0.723
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.723
MTR_1g090783 Medicago truncatula MTR_1g090783 N 0.708
PRUPE_ppa017207mg Prunus persica PRUPE_ppa017207mg N 0.756
TCM_025676 Theobroma cacao TCM_025676 N 0.702
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.723
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.702
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.723
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.702
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.702
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.702
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.702
evm.TU.supercontig_135.5 Carica papaya evm.TU.supercontig_135.5 N 0.702
evm.TU.supercontig_185.6 Carica papaya evm.TU.supercontig_185.6 N 0.731
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.723
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.702
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.723
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.702
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.702
gene15899-v1.0-hybrid Fragaria vesca gene15899-v1.0-hybrid N 0.745
Gorai.009G302800 Gossypium raimondii Gorai.009G302800 N 0.702
Gorai.011G189000 Gossypium raimondii Gorai.011G189000 N 0.702