AFAF001542 (Anopheles farauti)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 AFAF001542 T231709_2.00 Vectorbase (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.827 0.652
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.827 0.652
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.827 0.652
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.827 0.652
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.827 0.652
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.827 0.652
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.827 0.652
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.827 0.652
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.827 0.652
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.720 0.391
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.720 0.391
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.720 0.391
Rx
M03840_2.00 		Drosophila melanogaster
BTAATTRV
BYAATTAV		 SELEX
Nitta et al.(2015)
Rx_1 		0.377 1.000
Rx
M03841_2.00 		Drosophila melanogaster
NTAATBNSATTAN
NTAATSNVATTAN		 SELEX
Nitta et al.(2015)
Rx_2 		0.377 1.000
Rx
M06520_2.00 		Drosophila melanogaster
YTAATTR
YAATTAR		 B1H
Mathelier et al.(2014)
MA0202.1 		0.377 1.000
Rx
M06317_2.00 		Drosophila melanogaster
VYTAATTR
YAATTARB		 B1H
Zhu et al.(2011)
Rx_Cell_FBgn0020617 		0.377 1.000
Rx
M06318_2.00 		Drosophila melanogaster
HTAATTR
YAATTAD		 B1H
Zhu et al.(2011)
Rx_SOLEXA_FBgn0020617 		0.377 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AFAF001542-PA Homeodomain 241 286

Links

Other Homeodomain family TFs
Other Anopheles farauti TFs

1307 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29576.m000223 Ricinus communis 29576.m000223 I 0.000
30068.m002635 Ricinus communis 30068.m002635 I 0.000
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.000
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.000
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.000
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.000
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.000
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.000
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.000
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.000
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.000
Bo2g091240 Brassica oleracea Bo2g091240 I 0.000
Bo6g049430 Brassica oleracea Bo6g049430 I 0.000
Bra040010 Brassica rapa Bra040010 I 0.000
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.000
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.000
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.000
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.000
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.000
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.000
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.000
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.000
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.000
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.000
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.000
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.000
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.000
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.000
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.000
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.000
Cla005046 Citrullus lanatus Cla005046 I 0.000
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.000
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.000
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.000
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.000
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.000
F775_26337 Aegilops tauschii F775_26337 I 0.000
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.000
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.000
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.000
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.000
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.000
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.000
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.000
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.000
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.000
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.000
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.000
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.000
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.000
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.000
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.000
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.000
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.000
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.000
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.000
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.000
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.000
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.000
MDP0000156139 Malus domestica MDP0000156139 I 0.000
MDP0000451038 Malus domestica MDP0000451038 I 0.000
MDP0000451107 Malus domestica MDP0000451107 I 0.000
MDP0000701272 Malus domestica MDP0000701272 I 0.000
mgf004276m Mimulus guttatus mgf004276m I 0.000
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.000
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.000
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.000
OB02G33250 Oryza brachyantha OB02G33250 I 0.000
OB04G27270 Oryza brachyantha OB04G27270 I 0.000
OBART02G25970 Oryza barthii OBART02G25970 I 0.000
OBART04G20290 Oryza barthii OBART04G20290 I 0.000
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.000
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.000
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.000
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.000
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.000
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.000
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.000
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.000
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.000
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.000
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.000
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.000
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.000
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.000
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.000
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.000
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.000
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.000
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.000
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.000
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.000
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.000
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.000
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.000
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.000
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.000
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.000
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.000
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.000
Pm022570 Prunus mume Pm022570 I 0.000
Pm022572 Prunus mume Pm022572 I 0.000
Pm024289 Prunus mume Pm024289 I 0.000
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.000
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.000
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.000
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.000
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.000
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.000
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.000
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.000
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.000
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.000
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.000
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.000
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.000
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.000
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.000
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.000
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.000
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.000
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.000
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.000
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.000
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.000
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.000
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.000
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.000
Si012121m.g Setaria italica Si012121m.g I 0.000
Si016578m.g Setaria italica Si016578m.g I 0.000
Si034382m.g Setaria italica Si034382m.g I 0.000
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.000
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.000
TCM_001348 Theobroma cacao TCM_001348 I 0.000
TCM_015563 Theobroma cacao TCM_015563 I 0.000
TCM_035565 Theobroma cacao TCM_035565 I 0.000
TCM_035571 Theobroma cacao TCM_035571 I 0.000
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.000
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.000
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.000
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.000
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.000
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.000