Thhalv10023873m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10023873m.g T259182_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.917 0.917
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10023873m MADS box 10 58

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

129 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.733
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.750
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.771
AGL80 Arabidopsis thaliana AT5G48670 D 0.917
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.792
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.938
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.771
Bo2g104810 Brassica oleracea Bo2g104810 I 0.896
Bo5g145000 Brassica oleracea Bo5g145000 I 0.729
Bo9g078450 Brassica oleracea Bo9g078450 I 0.917
Bra018490 Brassica rapa Bra018490 I 0.917
Bra029469 Brassica rapa Bra029469 I 0.917
Bra041022 Brassica rapa Bra041022 I 0.778
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.917
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.917
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.733
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.766
evm.TU.contig_25253.5 Carica papaya evm.TU.contig_25253.5 I 0.724
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.733
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.756
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.711
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.773
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.750
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.706
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.711
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.721
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.773
evm.TU.contig_40008 Carica papaya evm.TU.contig_40008 I 0.724
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.708
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.733
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.708
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.729
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.708
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.708
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.729
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.761
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.711
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.714
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.733
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.761
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.729
Ca_06495 Cicer arietinum Ca_06495 I 0.795
Ca_08934 Cicer arietinum Ca_08934 I 0.727
Ca_13275 Cicer arietinum Ca_13275 I 0.822
Cla005226 Citrullus lanatus Cla005226 I 0.822
Cla009163 Citrullus lanatus Cla009163 I 0.729
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.875
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.875
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.804
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.804
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.822
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.756
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.761
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.761
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.729
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.804
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.787
Thhalv10002349m.g Eutrema salsugineum Thhalv10002349m.g I 0.729
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.800
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.750
Thhalv10002353m.g Eutrema salsugineum Thhalv10002353m.g I 0.727
Thhalv10002789m.g Eutrema salsugineum Thhalv10002789m.g I 0.739
Thhalv10002956m.g Eutrema salsugineum Thhalv10002956m.g I 0.733
Thhalv10002996m.g Eutrema salsugineum Thhalv10002996m.g I 0.733
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.854
Thhalv10019449m.g Eutrema salsugineum Thhalv10019449m.g I 0.766
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.787
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.854
Thhalv10019516m.g Eutrema salsugineum Thhalv10019516m.g I 0.766
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.787
Thhalv10019681m.g Eutrema salsugineum Thhalv10019681m.g I 0.729
Thhalv10019731m.g Eutrema salsugineum Thhalv10019731m.g I 0.762
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.787
Thhalv10019758m.g Eutrema salsugineum Thhalv10019758m.g N 0.708
Thhalv10019810m.g Eutrema salsugineum Thhalv10019810m.g I 0.745
Thhalv10019833m.g Eutrema salsugineum Thhalv10019833m.g I 0.729
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.938
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 1.000
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.917
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.708
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.812
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.792
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.833
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.792
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.800
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.822
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.745
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.708
Gorai.013G210400 Gossypium raimondii Gorai.013G210400 I 0.711
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.792
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.708
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.729
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.771
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.750
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.767
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.717
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.741
LjSGA_102554.1 Lotus japonicus LjSGA_102554.1 I 0.707
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.733
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.733
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.741
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.708
MDP0000846004 Malus domestica MDP0000846004 I 0.812
MDP0000925348 Malus domestica MDP0000925348 I 0.771
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.756
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.854
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.822
mgf026186m Mimulus guttatus mgf026186m I 0.795
GSMUA_Achr2G18410_001 Musa acuminata GSMUA_Achr2G18410_001 N 0.710
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.833
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.854
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.833
Pm003257 Prunus mume Pm003257 I 0.787
Pm003258 Prunus mume Pm003258 N 0.711
Pm004396 Prunus mume Pm004396 I 0.800
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.800
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.787
30128.m008984 Ricinus communis 30128.m008984 I 0.833
30199.m000879 Ricinus communis 30199.m000879 I 0.809
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.812
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.771
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.771
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.729
TCM_025670 Theobroma cacao TCM_025670 I 0.771
TCM_025671 Theobroma cacao TCM_025671 I 0.750
TCM_026842 Theobroma cacao TCM_026842 I 0.875
TCM_026845 Theobroma cacao TCM_026845 I 0.750
TCM_042799 Theobroma cacao TCM_042799 I 0.750
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.854