CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bo2g023630
(
Brassica oleracea
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Bo2g023630
T000745_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF017
M06568_2.00
Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN
Dap-seq
OMalley et al.(2016)
At1g19210_col_a
0.776
0.900
ERF017
M06569_2.00
Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN
Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a
0.776
0.900
ERF018
M00842_2.00
Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD
PBM
Franco-Zorrilla et al.(2014)
ORA47
0.756
0.840
ERF018
M01610_2.00
Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN
PBM
Weirauch et al.(2014)
pTH7215
0.756
0.840
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo2g023630.1
AP2
5
56
PKYTGVRKRKWGKWVAEIRLPNSRERIWLGSFDTAEKAARAFDAALYCLRGS
Links
Other
AP2
family TFs
Other
Brassica oleracea
TFs
122 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra020162
Brassica rapa
Bra020162
I
0.822
Bo3g015600
Brassica oleracea
Bo3g015600
I
0.813
Bra006599
Brassica rapa
Bra006599
I
0.813
Bra002377
Brassica rapa
Bra002377
I
0.807
Bo9g149820
Brassica oleracea
Bo9g149820
I
0.807
scaffold_602234.1
Arabidopsis lyrata
scaffold_602234.1
I
0.807
Carubv10001903m.g
Capsella rubella
Carubv10001903m.g
I
0.807
Bostr.26527s0082
Boechera stricta
Bostr.26527s0082
I
0.807
ERF016
Arabidopsis thaliana
AT5G21960
I
0.801
Thhalv10015465m.g
Eutrema salsugineum
Thhalv10015465m.g
I
0.798
SapurV1A.2229s0010
Salix purpurea
SapurV1A.2229s0010
I
0.782
POPTR_0006s23480
Populus trichocarpa
POPTR_0006s23480
I
0.782
SapurV1A.0373s0040
Salix purpurea
SapurV1A.0373s0040
I
0.782
cassava10604.m1
Manihot esculenta
cassava10604.m1
I
0.779
29739.m003647
Ricinus communis
29739.m003647
I
0.778
fgenesh2_kg.1__2098__AT1G19210.1
Arabidopsis lyrata
fgenesh2_kg.1__2098__AT1G19210.1
I
0.776
Carubv10011394m.g
Capsella rubella
Carubv10011394m.g
I
0.776
SapurV1A.0057s0300
Salix purpurea
SapurV1A.0057s0300
I
0.776
Cagra.1961s0079
Capsella grandiflora
Cagra.1961s0079
I
0.776
ERF017
Arabidopsis thaliana
AT1G19210
D
0.776
gene12919-v1.0-hybrid
Fragaria vesca
gene12919-v1.0-hybrid
I
0.774
evm.TU.supercontig_266.5
Carica papaya
evm.TU.supercontig_266.5
I
0.773
cassava20547.m1
Manihot esculenta
cassava20547.m1
I
0.770
Bo8g102870
Brassica oleracea
Bo8g102870
I
0.766
POPTR_0018s08320
Populus trichocarpa
POPTR_0018s08320
I
0.766
Bra031069
Brassica rapa
Bra031069
I
0.766
Aquca_076_00039
Aquilegia coerulea
Aquca_076_00039
I
0.766
Bo8g068370
Brassica oleracea
Bo8g068370
I
0.765
Bra016518
Brassica rapa
Bra016518
I
0.765
VIT_11s0016g00660
Vitis vinifera
VIT_11s0016g00660
I
0.764
Thhalv10009812m.g
Eutrema salsugineum
Thhalv10009812m.g
I
0.762
mgf024162m
Mimulus guttatus
mgf024162m
I
0.762
ORA47
Vitis vinifera
VIT_04s0008g02230
I
0.761
Lus10038082.g
Linum usitatissimum
Lus10038082.g
I
0.759
Lus10009798.g
Linum usitatissimum
Lus10009798.g
I
0.759
TCM_037415
Theobroma cacao
TCM_037415
I
0.759
Bo6g086740
Brassica oleracea
Bo6g086740
I
0.756
ERF018
Arabidopsis thaliana
AT1G74930
D
0.756
Carubv10020965m.g
Capsella rubella
Carubv10020965m.g
I
0.756
Bo6g119120
Brassica oleracea
Bo6g119120
I
0.756
Bra003780
Brassica rapa
Bra003780
I
0.756
Bostr.3288s0141
Boechera stricta
Bostr.3288s0141
I
0.756
ORA47
Arabidopsis lyrata
fgenesh2_kg.2__1761__AT1G74930.1
I
0.756
Cagra.0402s0035
Capsella grandiflora
Cagra.0402s0035
I
0.756
MTR_1g014820
Medicago truncatula
MTR_1g014820
I
0.755
Gorai.001G019100
Gossypium raimondii
Gorai.001G019100
I
0.755
MTR_1g014800
Medicago truncatula
MTR_1g014800
I
0.755
MTR_1g014860
Medicago truncatula
MTR_1g014860
I
0.755
Eucgr.C03297
Eucalyptus grandis
Eucgr.C03297
I
0.755
mgf021940m
Mimulus guttatus
mgf021940m
I
0.753
TCM_037486
Theobroma cacao
TCM_037486
I
0.752
chr5.CM0040.40.nd
Lotus japonicus
chr5.CM0040.40.nd
I
0.752
Bostr.7128s0526
Boechera stricta
Bostr.7128s0526
I
0.752
Ciclev10010348m.g
Citrus clementina
Ciclev10010348m.g
I
0.751
Bra015882
Brassica rapa
Bra015882
I
0.750
MDP0000704216
Malus domestica
MDP0000704216
I
0.748
Gorai.004G285900
Gossypium raimondii
Gorai.004G285900
I
0.747
Cucsa.055920
Cucumis sativus
Cucsa.055920
I
0.746
cassava25057.valid.m1
Manihot esculenta
cassava25057.valid.m1
I
0.746
Cla022291
Citrullus lanatus
Cla022291
I
0.746
POPTR_0006s14100
Populus trichocarpa
POPTR_0006s14100
I
0.746
29739.m003716
Ricinus communis
29739.m003716
I
0.745
PRUPE_ppa011336mg
Prunus persica
PRUPE_ppa011336mg
I
0.745
Pm027117
Prunus mume
Pm027117
I
0.745
GLYMA17G33535
Glycine max
GLYMA17G33535
I
0.743
POPTR_0006s14090
Populus trichocarpa
POPTR_0006s14090
I
0.742
MDP0000649022
Malus domestica
MDP0000649022
I
0.742
mgf025452m
Mimulus guttatus
mgf025452m
I
0.741
Eucgr.C00780
Eucalyptus grandis
Eucgr.C00780
I
0.740
Gorai.001G016800
Gossypium raimondii
Gorai.001G016800
I
0.739
Lus10033420.g
Linum usitatissimum
Lus10033420.g
I
0.739
Lus10034885.g
Linum usitatissimum
Lus10034885.g
I
0.739
Ca_09124
Cicer arietinum
Ca_09124
I
0.739
Ca_01683
Cicer arietinum
Ca_01683
I
0.739
SapurV1A.0521s0050
Salix purpurea
SapurV1A.0521s0050
I
0.738
orange1.1g029068m.g
Citrus sinensis
orange1.1g029068m.g
I
0.738
GLYMA06G06101
Glycine max
GLYMA06G06101
I
0.738
Ciclev10009540m.g
Citrus clementina
Ciclev10009540m.g
I
0.738
GLYMA04G06095
Glycine max
GLYMA04G06095
I
0.738
Gorai.010G091100
Gossypium raimondii
Gorai.010G091100
I
0.737
Thhalv10019652m.g
Eutrema salsugineum
Thhalv10019652m.g
I
0.737
PGSC0003DMG400002899
Solanum tuberosum
PGSC0003DMG400002899
I
0.736
Solyc12g009240.1
Solanum lycopersicum
Solyc12g009240.1
I
0.736
AMTR_s00007p00268280
Amborella trichopoda
AMTR_s00007p00268280
I
0.735
GLYMA14G12505
Glycine max
GLYMA14G12505
I
0.734
GLYMA13G17250
Glycine max
GLYMA13G17250
I
0.733
GLYMA17G05240
Glycine max
GLYMA17G05240
I
0.731
Bra025719
Brassica rapa
Bra025719
I
0.730
Pavir.J00593
Panicum virgatum
Pavir.J00593
I
0.727
GLYMA09G08330
Glycine max
GLYMA09G08330
I
0.726
Cla007584
Citrullus lanatus
Cla007584
I
0.726
Si019636m.g
Setaria italica
Si019636m.g
I
0.725
Pavir.Aa00296
Panicum virgatum
Pavir.Aa00296
I
0.725
Gorai.013G222700
Gossypium raimondii
Gorai.013G222700
I
0.724
GLYMA15G19910
Glycine max
GLYMA15G19910
I
0.723
chr6.CM0420.30.nd
Lotus japonicus
chr6.CM0420.30.nd
I
0.722
MTR_2g043050
Medicago truncatula
MTR_2g043050
I
0.720
GRMZM2G097081
Zea mays
GRMZM2G097081
I
0.719
Cucsa.141980
Cucumis sativus
Cucsa.141980
I
0.715
Cla011318
Citrullus lanatus
Cla011318
I
0.715
Aquca_076_00040
Aquilegia coerulea
Aquca_076_00040
I
0.712
LPERR02G28660
Leersia perrieri
LPERR02G28660
I
0.712
Ca_19295
Cicer arietinum
Ca_19295
I
0.707
MTR_3g105480
Medicago truncatula
MTR_3g105480
I
0.705
Cucsa.271180
Cucumis sativus
Cucsa.271180
I
0.705
MTR_2g043040
Medicago truncatula
MTR_2g043040
I
0.705
MTR_2g043030
Medicago truncatula
MTR_2g043030
I
0.705
MTR_3g105510
Medicago truncatula
MTR_3g105510
I
0.705
chr1.CM0133.1010.nc
Lotus japonicus
chr1.CM0133.1010.nc
I
0.704
Traes_6DL_FA861D610
Triticum aestivum
Traes_6DL_FA861D610
I
0.703
PK18548.1
Cannabis sativa
PK18548.1
I
0.702
Ca_19296
Cicer arietinum
Ca_19296
I
0.702
Ca_19297
Cicer arietinum
Ca_19297
I
0.701
Eucgr.C03175
Eucalyptus grandis
Eucgr.C03175
I
0.700
Si008104m.g
Setaria italica
Si008104m.g
I
0.692
MTR_1g014780
Medicago truncatula
MTR_1g014780
I
0.690
GSMUA_AchrUn_randomG02200_001
Musa acuminata
GSMUA_AchrUn_randomG02200_001
I
0.689
Solyc06g054630.1
Solanum lycopersicum
Solyc06g054630.1
I
0.686
PGSC0003DMG400030781
Solanum tuberosum
PGSC0003DMG400030781
I
0.686
Gorai.004G285200
Gossypium raimondii
Gorai.004G285200
I
0.686
GSMUA_Achr5G05160_001
Musa acuminata
GSMUA_Achr5G05160_001
I
0.684
AMTR_s00007p00268460
Amborella trichopoda
AMTR_s00007p00268460
I
0.682