Thhalv10019652m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10019652m.g T009967_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF018
M00842_2.00 		Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD		 PBM
Franco-Zorrilla et al.(2014)
ORA47 		0.808 0.940
ERF018
M01610_2.00 		Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN		 PBM
Weirauch et al.(2014)
pTH7215 		0.808 0.940
ERF017
M06568_2.00 		Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN		 Dap-seq
OMalley et al.(2016)
At1g19210_col_a 		0.784 0.900
ERF017
M06569_2.00 		Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN		 Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a 		0.784 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10019652m AP2 19 70

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mgf025452m Mimulus guttatus mgf025452m I 0.821
MDP0000704216 Malus domestica MDP0000704216 I 0.815
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.808
ERF018 Arabidopsis thaliana AT1G74930 D 0.808
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.808
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.808
Bra015882 Brassica rapa Bra015882 I 0.806
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.800
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.800
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.800
Bo6g086740 Brassica oleracea Bo6g086740 I 0.800
mgf021940m Mimulus guttatus mgf021940m I 0.797
Bo6g119120 Brassica oleracea Bo6g119120 I 0.797
Bra031069 Brassica rapa Bra031069 I 0.794
Bo8g102870 Brassica oleracea Bo8g102870 I 0.794
Bra003780 Brassica rapa Bra003780 I 0.793
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.791
TCM_037486 Theobroma cacao TCM_037486 I 0.789
mgf024162m Mimulus guttatus mgf024162m I 0.788
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.785
Cla007584 Citrullus lanatus Cla007584 I 0.784
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.784
ERF017 Arabidopsis thaliana AT1G19210 D 0.784
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.784
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.784
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.783
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.783
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.783
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.782
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.782
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.782
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.781
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.780
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.778
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.778
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.777
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.777
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.777
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.777
29739.m003716 Ricinus communis 29739.m003716 I 0.775
Pm027117 Prunus mume Pm027117 I 0.775
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.775
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.773
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.773
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.773
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.771
MDP0000649022 Malus domestica MDP0000649022 I 0.771
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.771
Bo8g068370 Brassica oleracea Bo8g068370 I 0.770
Bra016518 Brassica rapa Bra016518 I 0.770
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.769
Ca_09124 Cicer arietinum Ca_09124 I 0.769
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.769
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.769
TCM_037415 Theobroma cacao TCM_037415 I 0.768
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.768
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.767
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.766
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.765
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.765
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.765
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.763
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.762
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.760
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.759
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.759
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.759
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.758
Bra025719 Brassica rapa Bra025719 I 0.758
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.755
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.754
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.754
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.752
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.750
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.750
29739.m003647 Ricinus communis 29739.m003647 I 0.750
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.749
GLYMA17G33535 Glycine max GLYMA17G33535 I 0.748
Si019636m.g Setaria italica Si019636m.g I 0.748
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.748
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.747
Cla011318 Citrullus lanatus Cla011318 I 0.747
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.746
Ca_01683 Cicer arietinum Ca_01683 I 0.745
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.744
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.744
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.742
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.741
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.741
Ca_19297 Cicer arietinum Ca_19297 I 0.740
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.739
Bo2g023630 Brassica oleracea Bo2g023630 I 0.737
Bra020162 Brassica rapa Bra020162 I 0.735
Ca_19295 Cicer arietinum Ca_19295 I 0.734
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.732
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.732
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I 0.731
PK18548.1 Cannabis sativa PK18548.1 I 0.730
Ca_19296 Cicer arietinum Ca_19296 I 0.729
ERF016 Arabidopsis thaliana AT5G21960 I 0.728
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.728
Cla022291 Citrullus lanatus Cla022291 I 0.727
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.727
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.726
Bra006599 Brassica rapa Bra006599 I 0.722
Bo3g015600 Brassica oleracea Bo3g015600 I 0.722
Si008104m.g Setaria italica Si008104m.g I 0.721
Bra002377 Brassica rapa Bra002377 I 0.720
Bo9g149820 Brassica oleracea Bo9g149820 I 0.720
Carubv10001903m.g Capsella rubella Carubv10001903m.g I 0.720
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.720
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.720
Aquca_076_00040 Aquilegia coerulea Aquca_076_00040 I 0.717
Gorai.004G285200 Gossypium raimondii Gorai.004G285200 I 0.717
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.713
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.713
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.713
OS02G0781300 Oryza sativa OS02G0781300 I 0.713
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.713
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.713
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.713
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.713
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.712
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.712
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.711
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.710
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I 0.709
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.708
MTR_2g043020 Medicago truncatula MTR_2g043020 I 0.700
Traes_6AL_E6DAE246D Triticum aestivum Traes_6AL_E6DAE246D I 0.699
MTR_1g014780 Medicago truncatula MTR_1g014780 I 0.688
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.685