60638.m00016 (Ricinus communis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 60638.m00016 T006783_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.753 0.780
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.753 0.780
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.753 0.780
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.753 0.780
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.753 0.780
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.753 0.780
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.734 0.860
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.734 0.860
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.731 0.840
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.731 0.840
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.731 0.840
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.731 0.840
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.726 0.780
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.699 0.740
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.699 0.740
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.696 0.780
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.696 0.780
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.696 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
60638.m00016 AP2 46 97

Links

Other AP2 family TFs
Other Ricinus communis TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB1F Arabidopsis thaliana AT1G12610 D 0.753
DREB1C Arabidopsis thaliana AT4G25470 D 0.696
DREB1A Arabidopsis thaliana AT4G25480 D 0.731
DREB1D Arabidopsis thaliana AT5G51990 D 0.734
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.753
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.726
DREB1G Oryza sativa OS02G0677300 D 0.699
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.709
DREB1G Oryza indica BGIOSGA008804 I 0.699
Bo01335s010 Brassica oleracea Bo01335s010 I 0.759
Bo5g016750 Brassica oleracea Bo5g016750 I 0.705
Bo8g108050 Brassica oleracea Bo8g108050 I 0.750
Bo9g104770 Brassica oleracea Bo9g104770 I 0.734
Bra016763 Brassica rapa Bra016763 I 0.759
Bra026963 Brassica rapa Bra026963 I 0.750
Bra027612 Brassica rapa Bra027612 I 0.683
Bra028290 Brassica rapa Bra028290 I 0.734
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.704
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.724
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.687
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.749
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.700
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.736
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.682
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.780
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.766
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.684
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.694
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.699
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.788
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.759
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.699
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.704
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.749
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.702
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.713
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.713
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.697
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.703
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.701
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.697
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.697
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.725
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.712
OBART02G27760 Oryza barthii OBART02G27760 I 0.699
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.699
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.699
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.699
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.699
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.699
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.711
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.709
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.742
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.680
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.712
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.715
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.704
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.721
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.794
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.807
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.755
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.777
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.760
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.754
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.784
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.792
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.735
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.736
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.782
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.699
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.734
Si018262m.g Setaria italica Si018262m.g I 0.689
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.710
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.726
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.730
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.720
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.716
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.680
TCM_016175 Theobroma cacao TCM_016175 I 0.768
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.834
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.761
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.781
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.725
Ca_08732 Cicer arietinum Ca_08732 I 0.679
Ca_18948 Cicer arietinum Ca_18948 I 0.693
Cla002362 Citrullus lanatus Cla002362 I 0.722
Cla006315 Citrullus lanatus Cla006315 I 0.750
Cla011674 Citrullus lanatus Cla011674 I 0.753
Pm023769 Prunus mume Pm023769 I 0.782
Pm023772 Prunus mume Pm023772 I 0.780
Pm023775 Prunus mume Pm023775 I 0.784
30147.m014313 Ricinus communis 30147.m014313 I 0.734
30190.m011119 Ricinus communis 30190.m011119 I 0.773
30190.m011120 Ricinus communis 30190.m011120 I 0.729
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.817
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.731
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.760
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.816
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.685
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.700
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.753
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.728
mgf017136m Mimulus guttatus mgf017136m I 0.736
mgf019061m Mimulus guttatus mgf019061m I 0.736
mgf026339m Mimulus guttatus mgf026339m I 0.723
mgf026642m Mimulus guttatus mgf026642m I 0.754
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.688
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.704
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.695
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.714
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.710
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.743
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.734
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.726
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.730
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.756
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.730
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.734
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.745
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.753
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.707
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.730
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.730
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.719
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.745
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.707
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.734
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.694
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.733
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.700
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.756
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.742
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.693
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.758
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.747
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.769
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.708
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.760
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.778
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.790
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.790
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.790
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.718
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.790
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.790
MDP0000154764 Malus domestica MDP0000154764 I 0.783
MDP0000198054 Malus domestica MDP0000198054 I 0.794
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.690
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.694
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.735
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.699
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.699
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.773
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.738
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.777
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.807
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.773
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.738
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.756
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.734
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.726
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.756
PK23332.1 Cannabis sativa PK23332.1 I 0.747
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.692
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.721
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.707