Lus10001871.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10001871.g T008721_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.744 0.740
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.744 0.740
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.744 0.740
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.744 0.740
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.744 0.740
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.744 0.740
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.723 0.740
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.723 0.740
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.713 0.740
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.712 0.740
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.712 0.740
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.712 0.740
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.712 0.740
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.698 0.740
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.698 0.740
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.698 0.740
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.681 0.680
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.681 0.680
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10001871 AP2 41 92

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB1F Arabidopsis thaliana AT1G12610 D 0.744
DREB1C Arabidopsis thaliana AT4G25470 D 0.698
DREB1A Arabidopsis thaliana AT4G25480 D 0.712
DREB1D Arabidopsis thaliana AT5G51990 D 0.723
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.744
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.713
DREB1G Oryza sativa OS02G0677300 D 0.681
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.698
DREB1G Oryza indica BGIOSGA008804 I 0.681
Bo01335s010 Brassica oleracea Bo01335s010 I 0.748
Bo5g016750 Brassica oleracea Bo5g016750 I 0.699
Bo8g108050 Brassica oleracea Bo8g108050 I 0.741
Bo9g104770 Brassica oleracea Bo9g104770 I 0.723
Bra016763 Brassica rapa Bra016763 I 0.748
Bra026963 Brassica rapa Bra026963 I 0.741
Bra027612 Brassica rapa Bra027612 I 0.698
Bra028290 Brassica rapa Bra028290 I 0.723
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.691
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.705
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.748
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.723
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.765
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.750
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.686
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.681
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.773
GSMUA_Achr2G20280_001 Musa acuminata GSMUA_Achr2G20280_001 I 0.677
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.744
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.681
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.691
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.696
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.728
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.685
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.725
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.725
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.736
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.745
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.742
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.716
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.739
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.687
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.739
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.724
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.725
OBART02G27760 Oryza barthii OBART02G27760 I 0.681
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.681
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.681
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.681
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.681
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.681
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.736
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.678
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.709
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.706
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.703
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.713
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.706
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.804
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.831
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.757
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.736
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.733
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.727
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.771
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.764
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.732
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.732
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.769
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.681
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.723
Si018262m.g Setaria italica Si018262m.g I 0.681
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.738
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.756
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.754
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.751
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.683
TCM_016175 Theobroma cacao TCM_016175 I 0.763
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.799
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.746
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.747
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.698
Ca_04504 Cicer arietinum Ca_04504 I 0.681
Ca_08732 Cicer arietinum Ca_08732 I 0.694
Ca_18948 Cicer arietinum Ca_18948 I 0.685
Cla002362 Citrullus lanatus Cla002362 I 0.724
Cla006315 Citrullus lanatus Cla006315 I 0.722
Cla011674 Citrullus lanatus Cla011674 I 0.754
Pm023769 Prunus mume Pm023769 I 0.769
Pm023772 Prunus mume Pm023772 I 0.756
Pm023775 Prunus mume Pm023775 I 0.771
30147.m014313 Ricinus communis 30147.m014313 I 0.707
30190.m011119 Ricinus communis 30190.m011119 I 0.741
30190.m011120 Ricinus communis 30190.m011120 I 0.738
60638.m00016 Ricinus communis 60638.m00016 I 0.790
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.764
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.726
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.733
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.783
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.689
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.703
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.724
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.751
mgf017136m Mimulus guttatus mgf017136m I 0.722
mgf019061m Mimulus guttatus mgf019061m I 0.727
mgf026339m Mimulus guttatus mgf026339m I 0.733
mgf026642m Mimulus guttatus mgf026642m I 0.741
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.689
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.699
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.708
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.711
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.699
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.733
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.723
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.713
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.697
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.723
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.697
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.723
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.751
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.726
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.694
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.697
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.697
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.698
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.751
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.694
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.723
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.709
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.743
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.730
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.734
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.735
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.750
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.681
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.733
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.779
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.859
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.859
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.732
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.859
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.859
MDP0000154764 Malus domestica MDP0000154764 I 0.768
MDP0000198054 Malus domestica MDP0000198054 I 0.762
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.687
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.718
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.681
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.681
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.783
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.711
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.736
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.831
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.783
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.711
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.762
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.723
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.713
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.723
PK23332.1 Cannabis sativa PK23332.1 I 0.735
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.680
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.708