cassava9378.m1 (Manihot esculenta)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 cassava9378.m1 T344627_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.860 0.397
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.828 0.346
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava9378.m1 TCP 124 279

Links

Other TCP family TFs
Other Manihot esculenta TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_01923 Aegilops tauschii F775_01923 I 0.875
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.881
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.889
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.833
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.853
BRC1 Arabidopsis lyrata scaffold_302193.1 N 0.841
TCP1 Arabidopsis thaliana AT1G67260 D 0.828
BRC2 Arabidopsis thaliana AT1G68800 I 0.853
BRC1 Arabidopsis thaliana AT3G18550 I 0.842
Bostr.19424s0807 Boechera stricta Bostr.19424s0807 I 0.843
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.855
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.852
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.840
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.860
Bo1g117490 Brassica oleracea Bo1g117490 I 0.838
Bo2g055640 Brassica oleracea Bo2g055640 I 0.842
Bo2g061250 Brassica oleracea Bo2g061250 I 0.846
Bo3g071560 Brassica oleracea Bo3g071560 I 0.841
Bo5g117410 Brassica oleracea Bo5g117410 N 0.850
Bo6g099040 Brassica oleracea Bo6g099040 I 0.827
Bo6g103670 Brassica oleracea Bo6g103670 I 0.834
Bra001710 Brassica rapa Bra001710 I 0.848
Bra004212 Brassica rapa Bra004212 I 0.831
Bra034010 Brassica rapa Bra034010 I 0.833
Bra037579 Brassica rapa Bra037579 I 0.838
Bra038350 Brassica rapa Bra038350 I 0.846
PK16683.1 Cannabis sativa PK16683.1 N 0.828
PK19717.1 Cannabis sativa PK19717.1 D 0.860
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.843
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.855
Cagra.1681s0023 Capsella grandiflora Cagra.1681s0023 I 0.853
Carubv10013748m.g Capsella rubella Carubv10013748m.g I 0.853
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.855
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.841
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.903
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.883
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.827
Cla002355 Citrullus lanatus Cla002355 I 0.868
Cla007227 Citrullus lanatus Cla007227 I 0.838
Cla016709 Citrullus lanatus Cla016709 I 0.859
Cla018797 Citrullus lanatus Cla018797 N 0.836
Cla019282 Citrullus lanatus Cla019282 N 0.892
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.891
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.919
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.891
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.919
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.871
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.826
Cucsa.198860 Cucumis sativus Cucsa.198860 N 0.888
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.852
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.871
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.828
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.919
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.856
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.886
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.867
Thhalv10021948m.g Eutrema salsugineum Thhalv10021948m.g N 0.835
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.854
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.833
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.862
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.827
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.832
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.869
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.832
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.867
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.896
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.892
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.868
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.861
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.850
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.822
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.875
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.848
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.836
Lus10032465.g Linum usitatissimum Lus10032465.g N 0.867
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.853
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.831
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.857
MDP0000173048 Malus domestica MDP0000173048 I 0.883
MDP0000219838 Malus domestica MDP0000219838 N 0.863
MDP0000224810 Malus domestica MDP0000224810 N 0.886
MDP0000272980 Malus domestica MDP0000272980 I 0.866
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.864
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.877
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.963
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.836
mgf022233m Mimulus guttatus mgf022233m I 0.834
mgf024687m Mimulus guttatus mgf024687m I 0.870
mgf026636m Mimulus guttatus mgf026636m I 0.855
GSMUA_Achr2G21050_001 Musa acuminata GSMUA_Achr2G21050_001 I 0.842
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.822
OBART08G15630 Oryza barthii OBART08G15630 N 0.847
OBART09G10040 Oryza barthii OBART09G10040 I 0.848
ORGLA08G0137200 Oryza glaberrima ORGLA08G0137200 I 0.860
OGLUM08G16380 Oryza glumaepatula OGLUM08G16380 I 0.864
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.848
BGIOSGA028717 Oryza indica BGIOSGA028717 I 0.864
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.848
OMERI08G12900 Oryza meridionalis OMERI08G12900 I 0.864
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.853
ONIVA08G16720 Oryza nivara ONIVA08G16720 I 0.870
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.848
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.868
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.863
ORUFI08G17540 Oryza rufipogon ORUFI08G17540 I 0.864
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.848
OS08G0432300 Oryza sativa OS08G0432300 I 0.864
OS09G0410500 Oryza sativa OS09G0410500 I 0.848
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.848
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.854
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.867
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I 0.874
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.885
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.891
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.955
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.959
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.835
Pm015499 Prunus mume Pm015499 I 0.871
Pm029002 Prunus mume Pm029002 I 0.874
Pm030202 Prunus mume Pm030202 I 0.898
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.898
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.874
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.872
29738.m001041 Ricinus communis 29738.m001041 I 0.881
30167.m000856 Ricinus communis 30167.m000856 I 0.849
30174.m008721 Ricinus communis 30174.m008721 I 0.948
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.945
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.885
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.953
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.845
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.944
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.944
Si015230m.g Setaria italica Si015230m.g I 0.866
Si033183m.g Setaria italica Si033183m.g I 0.848
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.837
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.868
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.846
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.848
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.859
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.849
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.847
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.868
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.848
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.863
TCM_011874 Theobroma cacao TCM_011874 I 0.887
TCM_012252 Theobroma cacao TCM_012252 I 0.879
TCM_019518 Theobroma cacao TCM_019518 I 0.868
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.865
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.872
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.864
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.887
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.844
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.872
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.869
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.849
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.852
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.866